LOCUS       XM_006236743            1396 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Tp53rk binding protein (Tprkb),
            transcript variant X2, mRNA.
ACCESSION   XM_006236743
VERSION     XM_006236743.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006236743.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006236743.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1396
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1396
                     /gene="Tprkb"
                     /gene_synonym="Cgi-121; RGD1309786"
                     /note="Tp53rk binding protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 19 ESTs, 3 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 56 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:297411"
                     /db_xref="RGD:1309786"
     CDS             365..892
                     /gene="Tprkb"
                     /gene_synonym="Cgi-121; RGD1309786"
                     /codon_start=1
                     /product="EKC/KEOPS complex subunit Tprkb isoform X1"
                     /protein_id="XP_006236805.1"
                     /db_xref="GeneID:297411"
                     /db_xref="RGD:1309786"
                     /translation="MQLTQQLDLFPECKVTLLLFKDVKNAGDLRKKAMEGSIDGSLIN
                     ANVIVDPFQILVAANKAVHLHKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISESN
                     TSVLIVYVEDGDKQVHQEHLVSQVEGQQVPLESLPEITRLSEVRKIYKLSSQEERIGT
                     LLDGIICRMSTKDVL"
ORIGIN      
        1 cttggagtcc gtccacctga tcaaacatta agctcttccg gaagtagaga gcttcgtttc
       61 caaggggacg atcttctgag acggacagga gactgaggga acaggctatc tcttggagtc
      121 tgaagaagat agccagtccc accatgacaa gattccagcc acagtggaag atgaaaagac
      181 cttccttcag ctacgtcccc tggttctaga ggagtctcct gtgtatacac gtttgtggca
      241 tctgagccgt agaagcattt tccagactgt aaagacccac gctcctaatc tcctctaatc
      301 ttgaacttct gatcctcctc ttctgacctt cactggattc tagagagacc tccttgtcta
      361 tgaaatgcag ttaacacagc agctggactt gtttcccgag tgcaaggtga cccttctgtt
      421 atttaaagat gtaaaaaatg caggagactt gagaaaaaag gccatggaag gatctataga
      481 tggctcattg ataaatgcca atgtgattgt cgatccattt caaatacttg tggcagcaaa
      541 caaagccgtt catctccaca aactgggaaa aatgaagaca agaactctgt ctactgaaat
      601 tatcttcaac ctctccccaa ataataatat ttcagaggct ttgaagaagt ttggcatctc
      661 agaaagtaac acttcagttc tgattgttta tgttgaagat ggagacaaac aagtgcatca
      721 ggaacaccta gtatctcaag tggaaggcca gcaggtgccc ttggaaagtc ttcctgaaat
      781 aacaaggctc tcagaagtca ggaagatata taaactgtca tcacaagaag agaggattgg
      841 gacattattg gatggtatca tttgtagaat gtcaacaaag gatgttttat aagttgttta
      901 aaatatcaac agaaaatcat agaggtaatt actagctttt ctttcccact tctaaaatta
      961 acattctcat cacaggaaaa gggaagaagg tactactacc agtccgtttg tttttttact
     1021 tcttaaagat aacctctgtc actggtttta tcattgttat ttagtcctct acttatattt
     1081 caagaccttt catttttata caattggaat aaaaagtgca agcacctaga gaaggcttcg
     1141 gtgctcaagg ctcagcctca gtaatccttc atcactttgt cactcacctt atacttctgg
     1201 cttttccaca ttgcccttct aagctctggg tcctgagagt tttacgccta agaatttctt
     1261 ttactctaag ccaggtgtgg tgacttttta cagtccacta ctcaggaggc tgaggcagga
     1321 gaaagctaca agttcaagat cagcctaaag tactatgtca gttcccttct caataaatac
     1381 acagcagttc atttaa
//
