LOCUS       NM_053534               1627 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus transmembrane protein adipocyte associated 1
            (Tpra1), mRNA.
ACCESSION   NM_053534 XM_346706
VERSION     NM_053534.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Aki,T., Funakoshi,T., Nishida-Kitayama,J. and Mizukami,Y.
  TITLE     TPRA40/GPR175 regulates early mouse embryogenesis through
            functional membrane transport by Sjogren's syndrome-associated
            protein NA14
  JOURNAL   J Cell Physiol 217 (1), 194-206 (2008)
   PUBMED   18459117
REFERENCE   2  (bases 1 to 1627)
  AUTHORS   Fujimoto,K., Mizukami,Y., Kimura,M., Mogami,K., Todoroki-Ikeda,N.,
            Kobayashi,S. and Matsuzaki,M.
  TITLE     Molecular cloning of rat transmembrane domain protein of 40 kDa
            regulated in adipocytes and its expression in H9c2 cells exposed to
            ischemic hypoxia and reoxygenation
  JOURNAL   Biochim Biophys Acta 1518 (1-2), 173-177 (2001)
   PUBMED   11267675
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On May 9, 2012 this sequence version replaced NM_053534.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ228747.1, SRR26360186.551410.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-110               JAXUCZ010000004.1  122921484-122921593
            111-193             JAXUCZ010000004.1  122925096-122925178
            194-325             JAXUCZ010000004.1  122927635-122927766
            326-458             JAXUCZ010000004.1  122927878-122928010
            459-545             JAXUCZ010000004.1  122929096-122929182
            546-618             JAXUCZ010000004.1  122929316-122929388
            619-698             JAXUCZ010000004.1  122929480-122929559
            699-809             JAXUCZ010000004.1  122929922-122930032
            810-870             JAXUCZ010000004.1  122930112-122930172
            871-973             JAXUCZ010000004.1  122930324-122930426
            974-1054            JAXUCZ010000004.1  122930574-122930654
            1055-1627           JAXUCZ010000004.1  122931947-122932519
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..1627
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /note="transmembrane protein adipocyte associated 1"
                     /db_xref="GeneID:85494"
                     /db_xref="RGD:620858"
     exon            1..110
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            111..193
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            194..325
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     CDS             210..1319
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /note="G protein-coupled receptor 175; transmembrane
                     protein, adipocyte asscociated 1; transmembrane domain
                     protein regulated in adipocytes 40 kDa"
                     /codon_start=1
                     /product="transmembrane protein adipocyte-associated 1"
                     /protein_id="NP_445986.2"
                     /db_xref="GeneID:85494"
                     /db_xref="RGD:620858"
                     /translation="MANLQEANGSTAWPPPPASNISEPHQCLLLLYEDIGSSRVRYWD
                     LLLLIPNVLFFIFLLWKLPLARAKIRVTSSPIFITFYILVFVVALVGIARAVVSMTVS
                     ASDAATVADKILWEITRFFLLAIELSVVILGLAFGHLESKSSIKRVLAITTVLSLAYS
                     VTQGTLEILYPDSHLSAEDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKDRVS
                     LPSRRSFYVYAGILATLNLLQGLGSALLCADITEGLCCVDATTFLYFSFFAPLIYVAF
                     LRGFFGSEPKILFSYKCQVDEAEEPDMHLPQPYAVARREGIESAGPSGVSAANYSSTQ
                     FDSAGVAYLDDIASMPCHTGSINSTDSERWKAINA"
     exon            326..458
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            459..545
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            546..618
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            619..698
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            699..809
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            810..870
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            871..973
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1054
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1627
                     /gene="Tpra1"
                     /gene_synonym="Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctacgaccg acccacgtag aacctcggct gcggttcttg cgcgacgctc cccggttctc
       61 gctacctctt aggggtcgga gtcccgcggc ctgcgcagcc cggctctcag ctaacaggaa
      121 gaaagggcac gacctcaaac tggcgagttg cactcaagct gagggaagca gacggaaatc
      181 cagggttcca ctgggccact gccggtggaa tggccaacct gcaggaggcc aatggaagca
      241 cagcgtggcc accgccccca gcatccaata tcagtgagcc ccaccaatgc ctgctgctgc
      301 tgtatgagga tatcggctcc tccagggtcc ggtactggga cctcctgctg ctcattccca
      361 atgtgctctt cttcatcttc ctgctctgga agcttccctt agctcgggcc aagatccgtg
      421 tcacctccag ccccattttt attaccttct acatcttggt gtttgtggta gccctggttg
      481 gcattgccag ggctgtggtt tctatgacag tcagtgcctc tgatgctgcg acagttgctg
      541 ataagatcct gtgggagatc acccgcttct tcctgctggc cattgagctg agtgtggtca
      601 tcctgggcct tgcctttggt cacctagaga gcaagtccag catcaagcgg gtactggcta
      661 tcaccacagt actgtctctg gcctactcag tcacccaggg gactctggag atcctgtacc
      721 ctgactccca tctgtcagct gaggatttca acatctatgg ccatggtggc cgccagttct
      781 ggcttgtcag ctcttgcttc tttttcctgg tctactcact ggtggtaatt ctccccaaga
      841 ccccgctgaa ggatcgtgta tccctgccct cacggaggag tttctacgtg tatgcaggca
      901 tcctggccac acttaactta ctgcagggtt tggggagtgc tctgctctgc gctgacatca
      961 ctgaggggct ctgctgtgtg gacgccacca ccttcctgta cttcagcttc tttgcgcccc
     1021 tcatctatgt ggccttcctc cgtggcttct tcggctcaga gcccaagatc cttttctctt
     1081 acaaatgcca agtggatgag gcagaggagc cagacatgca cctgccacaa ccctacgccg
     1141 tggcccggcg cgagggcatc gagtccgcag gaccctcggg agtctcagca gccaactact
     1201 ccagcacgca gttcgactct gctggggtgg cctacttaga tgacattgcc tccatgccct
     1261 gccacacggg cagcatcaac agcacagaca gtgagcgttg gaaagctatc aatgcctgag
     1321 tgggcacctg agcgtgtaaa gacagacggg cttctaggtg cagtggagtg ctgtggagga
     1381 actcatgtgg atagccctgg gcaggctacc tgctcccccg gctaccagcc ccttcctgtt
     1441 cttcaccccc agttctcctc tgcctcctgt gctcctgttt gggaccgcca cactcctggc
     1501 actgcattcc tgctggggtc ccgcctgccc agctcctgtc ccttcacagc tctcagcctc
     1561 ctggccacaa ggctgcagtg tatatatttt cttgatctat tttttaataa aagcaaaaag
     1621 agtagta
//
