LOCUS       NM_001014147            2459 bp    mRNA    linear   ROD 10-DEC-2024
DEFINITION  Rattus norvegicus tubulin polyglutamylase complex subunit 2
            (Tpgs2), mRNA.
ACCESSION   NM_001014147 XM_341585
VERSION     NM_001014147.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2459)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC079332.1.
            
            On Apr 20, 2005 this sequence version replaced XM_341585.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079332.1, CK364197.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2459              BC079332.1         1-2459
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p12"
     gene            1..2459
                     /gene="Tpgs2"
                     /gene_synonym="Pgs2; RGD1310571"
                     /note="tubulin polyglutamylase complex subunit 2"
                     /db_xref="GeneID:361301"
                     /db_xref="RGD:1310571"
     exon            1..163
                     /gene="Tpgs2"
                     /gene_synonym="Pgs2; RGD1310571"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..972
                     /gene="Tpgs2"
                     /gene_synonym="Pgs2; RGD1310571"
                     /codon_start=1
                     /product="tubulin polyglutamylase complex subunit 2"
                     /protein_id="NP_001014169.2"
                     /db_xref="GeneID:361301"
                     /db_xref="RGD:1310571"
                     /translation="MEETPPPMQAGSKPHLEKLTLGVTRILESSPGVTEVSIIEKLPA
                     ERHMISSWEQKNNCVMPEDVRNFYLMTNGFHMTWSVKLDDHIIPLGSMVINGISKLTQ
                     LIQSSVYSLPNAPTLADLEDDSQEGNEDHQLEKPHFDCRSAIFELDSCGGNGKVCLVY
                     KNGKPGLAHDTEIWFLDRALYWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQA
                     KQWFSMYKPITYNTSLLTEEPDTFVNKLDPSKVFKSKNKILIPKKKGPVQPVSGQKGP
                     GPLAPPTSKPSAGCGNPVRK"
     exon            164..243
                     /gene="Tpgs2"
                     /gene_synonym="Pgs2; RGD1310571"
                     /inference="alignment:Splign:2.1.0"
     exon            244..331
                     /gene="Tpgs2"
                     /gene_synonym="Pgs2; RGD1310571"
                     /inference="alignment:Splign:2.1.0"
     exon            332..460
                     /gene="Tpgs2"
                     /gene_synonym="Pgs2; RGD1310571"
                     /inference="alignment:Splign:2.1.0"
     exon            461..577
                     /gene="Tpgs2"
                     /gene_synonym="Pgs2; RGD1310571"
                     /inference="alignment:Splign:2.1.0"
     exon            578..738
                     /gene="Tpgs2"
                     /gene_synonym="Pgs2; RGD1310571"
                     /inference="alignment:Splign:2.1.0"
     exon            739..2434
                     /gene="Tpgs2"
                     /gene_synonym="Pgs2; RGD1310571"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtcagccgg ccggccggct gtgcacggca gcgccgggga ctgggcccgc cgctgccgcg
       61 cgcggggtga agacgcgtgc catggaggag acaccgcccc caatgcaagc cggcagcaag
      121 ccgcaccttg agaagttgac cctgggcgta actcgcatcc tggaatcttc cccaggtgtg
      181 acagaggtga gcataataga aaagctgcct gctgagcgtc atatgatttc ttcatgggaa
      241 cagaaaaaca attgtgtgat gcctgaggat gtgagaaact tctacttgat gaccaatggt
      301 tttcacatga cctggagtgt gaagctagat gaccacatta ttccactggg aagcatggtg
      361 attaatggca tttccaaact gactcagctc atccagtcct ccgtgtactc acttcctaat
      421 gcaccaactc tggcggacct ggaggatgat tctcaagaag gcaatgaaga ccaccagctc
      481 gagaagcctc actttgactg tcgcagtgcg atatttgagc tggattcatg cggtgggaat
      541 gggaaagttt gcctcgtcta caaaaatggg aaacctggat tagctcatga cactgagata
      601 tggttcctgg acagagcgtt atactggcat tttctcacag acacctttac tgcctattac
      661 cgcctgctca tcacccacct gggcctgccc cagtggcaat atgcctttac cagctatggc
      721 attagcccac aggccaagca atggttcagt atgtacaaac ccatcaccta caacacgagc
      781 ctgctcacag aagagcccga cacctttgtg aacaagctgg accccagcaa agtgttcaag
      841 agcaagaaca agattttaat cccaaaaaag aaagggcctg tgcagcctgt cagtggccag
      901 aaagggcccg ggcccttagc tccgcctacc tctaaacctt ctgcaggctg tggaaaccct
      961 gtccgaaaat aagcgttctg tcacctccca tcagtaatat ctgggcacag acagccctgt
     1021 gcaggcccca ccattctcct gagagaccaa agccttaggc cttcactccc actgttgtta
     1081 gccaggagtt gggacaatca cactgaattc tccccaggag tccattcctc tgtaggttgt
     1141 gccaacctcg tctccaaatc caacgacggc tttcagatgt acctagagct ttcttatgtc
     1201 tgtacccaat ccttaacttc ttagcagtaa ttagagaggt caccctccca aataaaccca
     1261 tggtttgaat catcagtaac gactagtcat gtgaccatcg cggttatgaa aatttcatac
     1321 cttcaattgc attagccaca cttcaggggt gcacccaata gtagattcca tattggccag
     1381 cacagaaagg ggaacatttc tgtcacagaa gcattttgga cagaattgca tgtgaacact
     1441 ttcatactgt tcttcagatc caataatgtt tgacaacgtt actgccttaa cttcatgggc
     1501 tttatgcttt aagaaaacac tgtcaaagtc ttgggttctt tacaaccaat accacacatt
     1561 tcacttgagt catttctttt ttaatttgct ataaaatatc gtgttcctga tcagtttcta
     1621 catttgccaa aatcatcttt aaagagatcg acccttgctg tattttatct gttagttccc
     1681 ggggcatcgt ttgcagacaa agccagtctg gtaagaattt ccagctcttc tgcttatgca
     1741 cagttggatg ctgttgctcc cagcttgctt aagtctaagc aatggtaggt gtggggtccc
     1801 aagaagcctt tgtacatgag tgtcctattc aaaaggcgtt tcccccatag cagcatgatg
     1861 gtattagaca ctgcgccgtc ccacaggttt atcatgtggc atagattagg cgtataacag
     1921 aagttctgta gagaaagacg tactctgatt ttcagttaag agtatctgtt ccttcgtctg
     1981 cactcctggc aatgggcagg agttttgatg gctgtataat ttttgtaatg atactccaga
     2041 ggtagaataa agagttctga ggaggaacag actgcacact ccctttccag ttggccaacc
     2101 tactcaaact tttctactat ggtggttgtc tgggcttctt tcctagtatg tgatgggagc
     2161 gagaagcccc tgtcattttc tacctgtact tcttcaacac cactttgaat gtttagtgaa
     2221 ggtttcaaat tcttgttttg gggactggaa ggatggctca gcagttagga gcgtggacta
     2281 ctcatgcaga ggacccgagg tcatgttgca gcacccatgt gaagcagttt atggcccctg
     2341 gaactccaac tccaggaggc tcaacatgtt ctccaaattc cacaggcacc tatgcacaca
     2401 caaagaagga aataaaaaca tttgaaaaac tgttaaaaaa aaaaaaaaaa aaaaaaaaa
//
