LOCUS       NM_031807               2333 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus trophoblast glycoprotein (Tpbg), mRNA.
ACCESSION   NM_031807
VERSION     NM_031807.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Um,J.W., Pramanik,G., Ko,J.S., Song,M.Y., Lee,D., Kim,H.,
            Park,K.S., Sudhof,T.C., Tabuchi,K. and Ko,J.
  TITLE     Calsyntenins function as synaptogenic adhesion molecules in concert
            with neurexins
  JOURNAL   Cell Rep 6 (6), 1096-1109 (2014)
   PUBMED   24613359
REFERENCE   2  (bases 1 to 2333)
  AUTHORS   Teckchandani,A., Toida,N., Goodchild,J., Henderson,C., Watts,J.,
            Wollscheid,B. and Cooper,J.A.
  TITLE     Quantitative proteomics identifies a Dab2/integrin module
            regulating cell migration
  JOURNAL   J Cell Biol 186 (1), 99-111 (2009)
   PUBMED   19581412
REFERENCE   3  (bases 1 to 2333)
  AUTHORS   Barrow,K.M., Ward,C.M., Rutter,J., Ali,S. and Stern,P.L.
  TITLE     Embryonic expression of murine 5T4 oncofoetal antigen is associated
            with morphogenetic events at implantation and in developing
            epithelia
  JOURNAL   Dev Dyn 233 (4), 1535-1545 (2005)
   PUBMED   15977177
REFERENCE   4  (bases 1 to 2333)
  AUTHORS   Shaw,D.M., Woods,A.M., Myers,K.A., Westwater,C., Rahi-Saund,V.,
            Davies,M.J., Renouf,D.V., Hounsell,E.F. and Stern,P.L.
  TITLE     Glycosylation and epitope mapping of the 5T4 glycoprotein
            oncofoetal antigen
  JOURNAL   Biochem J 363 (Pt 1), 137-145 (2002)
   PUBMED   11903056
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            [WARNING] On Jul 19, 2024 this sequence was replaced by
            NM_031807.3.
            
            On Nov 26, 2020 this sequence version replaced NM_031807.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF063939.1, SRR26643297.29354.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                JAXUCZ010000008.1  95673993-95674027
            36-2333             JAXUCZ010000008.1  95675065-95677362
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..2333
                     /gene="Tpbg"
                     /gene_synonym="5T4; WAIF1"
                     /note="trophoblast glycoprotein"
                     /db_xref="GeneID:83684"
                     /db_xref="RGD:621453"
     exon            1..35
                     /gene="Tpbg"
                     /gene_synonym="5T4; WAIF1"
                     /inference="alignment:Splign:2.1.0"
     exon            36..2333
                     /gene="Tpbg"
                     /gene_synonym="5T4; WAIF1"
                     /inference="alignment:Splign:2.1.0"
     CDS             364..1644
                     /gene="Tpbg"
                     /gene_synonym="5T4; WAIF1"
                     /note="5T4 oncotrophoblast glycoprotein; 5T4 oncofetal
                     trophoblast glycoprotein; wnt-activated inhibitory factor
                     1"
                     /codon_start=1
                     /product="trophoblast glycoprotein precursor"
                     /protein_id="NP_113995.2"
                     /db_xref="GeneID:83684"
                     /db_xref="RGD:621453"
                     /translation="MPGAGSRGPSAGDGRLRLARLALVLLGWVSASAPSSSLPSSSTS
                     PAAFLASGSAQPPPAERCPAACECSEAARTVKCVNRNLLEVPADLPPYVRNLFLTGNQ
                     MTVLPAGAFARQPPLADLAVLNLSGNHLKEVGAGAFEHLPGLRRLDLSHNPLTNLSAF
                     TFAGSNVSVSTPSPLLELILNHIVPPEDQRQNGSFEGMVAFEGMVAAALRSGLALRGL
                     HHLELASNHFLYLPRDLLDQLPSLKHLDLRNNSLVSLTYASFRNLTHLESLHLEDNAL
                     KVLHNSTLAEWQGLAHVRVFLDNNPWVCDCYMADMVSWLKETEVVPDKARLTCAFPEK
                     MRNRGLLDLTSSDLDCDATLPQSLQTSYVFLGIVLALIGAIFLLVLYLNRKGIKKWMH
                     NIRDACRDHMEGYHYRYEINADPRLTNLSSNSDV"
ORIGIN      
        1 caagagatcc accagcggtt ttgtttctgt ccgaggtcgc ccatccgatc cttccctgag
       61 agaggcgcca acaaaggagt tgaggaggtg ccacccaccc cagcggcggc tggaggagga
      121 gcgccaaggc ccgtgtcccg acccgccgtg cgtactcact ggagggaagg gcggggtacc
      181 gctccgggag ggagacgccc ggtggcccgg ggttagccaa gttccagctt tggcgtccct
      241 tccttggctc ccacgcgagg aaagtttgcc gtcgacgctt gcggccgtct cgcgcccgcc
      301 gggcccaggc ggtcgagtct tcggagcggg caccgtccca gctccgggga accgcgagcc
      361 gcgatgcctg gggcgggctc ccggggcccc tctgccgggg acggacggct gcggttggca
      421 aggctggcgc tagtgctgct gggttgggtc tccgcgtcgg cccccagctc ttcgctaccc
      481 tcgtcttcca cctccccggc tgccttcctg gcttcggggt ctgcgcagcc tccgccggcc
      541 gagcgatgcc ccgctgcgtg cgagtgctcc gaggcggcgc gcacggttaa gtgcgtgaac
      601 cgcaacctgc tggaggtgcc tgcggacctg ccaccttacg tgcgcaacct tttcctcact
      661 ggcaaccaga tgaccgtgct cccggctggc gccttcgccc gccagccgcc gctcgccgac
      721 ctggcagtgc tcaacctcag cggcaaccac ctgaaggagg tgggtgcagg tgccttcgag
      781 catctgcccg gccttcgccg gcttgacctc agccacaatc ctctcaccaa cctcagcgcc
      841 ttcaccttcg cgggcagcaa cgtcagcgtc tcgaccccca gccccctgtt ggagctgatc
      901 ttgaatcaca tcgtgccccc tgaggatcag cggcagaatg ggagcttcga gggcatggtg
      961 gccttcgagg gcatggtggc agctgccctg cgctcaggcc ttgcactccg agggctgcat
     1021 cacctagagc tggccagcaa tcactttctt tacctgcctc gggacttatt ggaccaactg
     1081 ccaagtctca agcacctgga cctcaggaac aactccctgg tgagcctgac ctatgcatct
     1141 ttccgcaacc tgacacacct cgaaagcctc cacttggagg acaatgccct caaggtcctt
     1201 cacaactcca ccttggctga gtggcaaggc ctggctcatg tcagggtgtt cctggacaac
     1261 aatccctggg tttgtgactg ctacatggct gacatggtgt cttggcttaa agagacagag
     1321 gtggtgccgg ataaagccag gctcacctgc gcattcccag aaaaaatgag gaaccgtggc
     1381 ctcttggacc tcaccagctc tgacctggac tgtgacgcta cccttcccca atccctgcag
     1441 acttcctatg tcttcttagg tattgtttta gctctgatag gcgctatttt cctcctcgtt
     1501 ttgtatttga accggaaagg cataaagaag tggatgcata acatcagaga tgcctgcagg
     1561 gatcacatgg aagggtatca ttacagatac gaaatcaatg cggaccccag attaacaaat
     1621 ctcagttcca actcggatgt ctgagaacta ggactggcca aggaggactc tgcatgaggt
     1681 gtatgtagac ttaaggtccc tcccccccct ttactatgct tgctccactt ccaccctcca
     1741 ccgtagacac cattgatttt gatcctcgtt atgtaaaatt cttggtgtgt tctgttaatg
     1801 taaggacatg aacaactgtg catataatgt ttatttaccc ctttcctttt ggtactcctc
     1861 gatgcctgca gagggacttt tttttttcct ctcaagttgc agcatggaca tggactctta
     1921 gttgagctca aggcgtagca cagataacat tcaacgggag ctgcctcaat ttcttttttc
     1981 ttttttgaga aaagtacttt attcataaat atgagtttta ttgtcaccta cctaaattat
     2041 ggaggaaata ttgcatcccc aaattgcctg cagaccttag caagctctta cctagaactt
     2101 ggtagtgcac aggagcacct gcatccgaga gcatgcgtac attttactgt tctgcatatt
     2161 aaaaaaattg caacgtcaga taacttcttt gacagactaa attacttttt tgattgcagt
     2221 ttacatgaaa ctgacccgag gtttttcttt ttcttttttt ataaactgca ttgagaccca
     2281 acagactgga ttgttatata aaaaaagaaa aatcaataaa agagtctcaa aag
//
