LOCUS       NM_001083338            2976 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus translocase of outer mitochondrial membrane 40
            like (Tomm40l), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001083338 XM_006250247
VERSION     NM_001083338.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2976)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 2976)
  AUTHORS   Kinoshita,J.Y., Mihara,K. and Oka,T.
  TITLE     Identification and characterization of a new tom40 isoform, a
            central component of mitochondrial outer membrane translocase
  JOURNAL   J Biochem 141 (6), 897-906 (2007)
   PUBMED   17437969
REFERENCE   3  (bases 1 to 2976)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On or before Oct 18, 2022 this sequence version replaced
            XM_006250247.4, NM_001083338.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.505530.1,
                                           SRR26360190.3312937.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                JAXUCZ010000013.1  86174048-86174121   c
            75-323              JAXUCZ010000013.1  86173576-86173824   c
            324-391             JAXUCZ010000013.1  86173234-86173301   c
            392-484             JAXUCZ010000013.1  86172828-86172920   c
            485-586             JAXUCZ010000013.1  86172461-86172562   c
            587-692             JAXUCZ010000013.1  86172203-86172308   c
            693-815             JAXUCZ010000013.1  86171785-86171907   c
            816-892             JAXUCZ010000013.1  86171580-86171656   c
            893-995             JAXUCZ010000013.1  86171267-86171369   c
            996-2976            JAXUCZ010000013.1  86169160-86171140   c
FEATURES             Location/Qualifiers
     source          1..2976
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q24"
     gene            1..2976
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /note="translocase of outer mitochondrial membrane 40
                     like"
                     /db_xref="GeneID:304971"
                     /db_xref="RGD:1562006"
     exon            1..74
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
     exon            75..323
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
     CDS             209..1135
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /note="translocase of outer mitochondrial membrane 40
                     homolog B; translocase of outer mitochondrial membrane 40
                     homolog-like"
                     /codon_start=1
                     /product="mitochondrial import receptor subunit TOM40B"
                     /protein_id="NP_001076807.1"
                     /db_xref="GeneID:304971"
                     /db_xref="RGD:1562006"
                     /translation="MGNTLGLAPMGTLPRWSHRREEPLPNPGSFDELHRLCKDVFPAQ
                     MEGVKLVVNKVLSSHFQVAHTVHMSALGLPGYHLHTAYAGDWQLSPTEVFPTVVGDMD
                     SSGSLNAQVLLLLAERLRAKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGE
                     SVIMVAHFLQSITHRLVLGGELVYHRRPGEEGAILTLAGKYSALHWVATLNVGSGGAH
                     ASYYHKANEQVQVGVEFEANTRLQDTTFSFGYHLTLPQADMVFRGLVDSNWCVGAVLE
                     KKMRPLPVTLALGAFLNHWRNRFHCGFSITVG"
     exon            324..391
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
     exon            392..484
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
     exon            485..586
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
     exon            587..692
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
     exon            693..815
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
     exon            816..892
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
     exon            893..995
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
     exon            996..2976
                     /gene="Tomm40l"
                     /gene_synonym="RGD1562006; Tomm40b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actcaagatg gctgccccca tcaagatgac cggggtgtgc ctaggggaaa gaggcagcag
       61 gatggtttga gatggtcttg cattgaaccg tatggaagtt tctgaaactg gggagcctga
      121 tgatgggggg tggagcccgt gggggataga gggagcaata gattttttcc ccagctaacc
      181 ccaacccctc cctgtcctct gaactaaaat ggggaacacc ctgggcctgg caccgatggg
      241 gactttaccc cgctggagcc accgtcggga ggaaccgctg cccaaccccg ggagcttcga
      301 tgagctgcac cggttgtgca aagatgtatt cccagcacag atggaaggcg tgaagctggt
      361 tgtcaacaag gttctgagca gccatttcca ggtggctcat actgtgcaca tgagtgccct
      421 gggcttgcca gggtaccacc tccataccgc ctatgcaggg gactggcagc ttagtcccac
      481 agaggtgttc cccactgtgg tgggggatat ggacagcagt ggcagtctca acgcccaggt
      541 cttgcttctg ttggcagaac ggctgcgagc taaggctgtc ttccagacac agcaagccaa
      601 gttcctgaca tggcagtttg atggtgaata tcgaggagat gactacacag ccactctgac
      661 cctgggaaat ccggatctga ttggggaatc agtgattatg gttgctcact tcctgcaaag
      721 catcactcat cggcttgtac taggagggga gctagtttat caccggcggc caggagaaga
      781 gggagccatt ttgactctgg ctgggaagta ctcagctctt cactgggtag ctacattgaa
      841 tgttgggtca ggtggggccc atgcaagtta ttaccacaag gcaaatgaac aggttcaggt
      901 tggagtagag tttgaagcaa atacaaggct acaagataca accttctcct ttggttacca
      961 cctgactctg ccccaggccg atatggtgtt tagaggcttg gtggatagta actggtgtgt
     1021 aggtgctgtg ttggagaaga agatgcgtcc cctgcctgtc accctagccc tcggagcctt
     1081 cctcaatcac tggcgaaaca gattccattg tggcttcagc atcactgtgg gctgaggttg
     1141 tcccggaagc agcctctaca gcagctggaa cctttgcatc tgatgcccta gggcctgaga
     1201 ctaactaggt ccctctccag agcctacctt gccggatgac tcctaggtcc catgggcaga
     1261 gtgggggaca ggacaatgtc ctcctcagaa ctggaactgc cacagaatca tttttccagt
     1321 caggcagtga gttgaggctc ccaacactgc catcagcccc attataattt cctacaagct
     1381 ctatggctct ggagtaaagg agaaagacta agggatatgt ctggcttccc tcaccctact
     1441 tttttttttc gttatatata tatatatata tatatttttt tttttggttc tttttttccg
     1501 gagctgggga ccgaacccag ggccttgcgc ttcctaggta agcgctctac cactgagcta
     1561 aatccccagc cttttttcgt tatttttgtc ccattaagat attagttcct ccttcctcaa
     1621 agcagagaaa tctgcatgaa aatggggagc agaagaaaac ccttctatcc catctctcct
     1681 ggtttgtcca ttcctcggcc tcccacgtct gggaaggtgg gattaaagag ctaaatcttt
     1741 ggccacggaa agatgaaaga atgggcccac acatcccaga gggaacttta ttcacctcct
     1801 ggcccggagg ctcctgtctt tcccaccctc tgtgtttcca gagaacaact ttggccctat
     1861 ggccacccaa ctcccttctc tctgtcccct acccactccc tgccccactg atgaccgcac
     1921 gaagagacag ttactgttca gtgtttcttt gccataacgg agctcctttc ttctggttcc
     1981 catttcgggt accagcactt taccctttcc aatccaatgc atcccaagag gtctggggaa
     2041 ggatccaagc ctgggcctca gctgcaaatc tccccaagca gcggcatcat agcagacagt
     2101 ccctggatgc gatggatttc atatgagtat gcgctgttta tactccgaag ctcagctagc
     2161 aggcccatca gctttgcata cagaaacctt tggaggaagt ggcagggtta ccagggaact
     2221 agggcagcta gaagtcctgt cctgaggttc ccatcccctg aactgtccct aagagaggct
     2281 aagtctgagc actagaaaat catgctcttg gtggcccatc tatatttgga aaaatctcag
     2341 acatccccaa gaagggtctc tatcaacact cttttccttc tttgtgccta gtttttcttg
     2401 aacctagggc tttgaggtca aggataaagc aaggacttgc ccaaaacttc aagtagatag
     2461 aatcggaggc tggagccttc tggatcaagt tccagaaggt gggtgtgtta tgctacggta
     2521 taaagcaccc ccctctgagc aaatggatcg attagggaat gagcagagca aaagtggcat
     2581 ggacttctga gcaggggcag gcttcgtctg tgaaagtgtg gaggatccta acttcaacgg
     2641 gaccgaaaac ttcaaggagt tgagccaaag gagaggagca ggccacaaaa gtgaacaaga
     2701 ctgaaatttt agctttagtt tggaaaagtc ggggaggtga ggtgagagat gtccccaatc
     2761 tcaggaatgc tgtcacacac aggctatgag ccactacttt gcatctctac ggaatgaaaa
     2821 caacaacaaa agccaaaaaa gttgggaaag tgagaccagc agtcggggca atctggagac
     2881 cggaactatt gttatgggga gaccccgagg ggaaggtcta gattcctaag tacttggttt
     2941 cccaaaggaa acaacagtaa aatgcattcg tccaga
//
