LOCUS       XM_017601310            2267 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus target of myb1 membrane trafficking
            protein (Tom1), transcript variant X2, mRNA.
ACCESSION   XM_017601310
VERSION     XM_017601310.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086037) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017601310.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2267
                     /gene="Tom1"
                     /note="target of myb1 membrane trafficking protein;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 30 ESTs, 142 long SRA reads, 20
                     Proteins"
                     /db_xref="GeneID:361370"
                     /db_xref="RGD:1308024"
     CDS             197..1576
                     /gene="Tom1"
                     /codon_start=1
                     /product="target of Myb1 membrane trafficking protein
                     isoform X2"
                     /protein_id="XP_017456799.1"
                     /db_xref="GeneID:361370"
                     /db_xref="RGD:1308024"
                     /translation="MEICDIINETEEGPKDAFRAVKKRIVGNKNFHEVMLALTVLETC
                     VKNCGHRFHVLVASQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLT
                     GVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNPVVSNSSHRGDLSQ
                     HATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVNGNVRVMSEMLTELVPTQVEPADL
                     ELLQELNRTCRAMQQRILELIPRISNEQLTEELLMINDNLNNVFLRHERFERFRTGQT
                     AKASGEAELAADLIDMGPDPAATSNLSSQLAGVDLGSSRVRAGLQSLEASGHLEDDFD
                     MFALTRGSSLADQRKGVKYEAPQTTDGLAGALDARQQSTGAIPATQARIMEDIEQWLS
                     TDVGSSAEEPSGVTSEEFDKFLEERAKAADRLPNLASPSAEGPPRPCPGAAPRRKTQE
                     KDDDVLFAL"
     polyA_site      2267
                     /gene="Tom1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cggccagcgg gtcacgtgac gggtcggcgg cgccggcggt tgctgtcacc tgattctggg
       61 agctggtggc agtggtagcc gcggcaatgg actttctcct gggaaacccg ttcagttctc
      121 ccgtgggaca gcggatcgtt tcttcacaga gaaagctaca gatggctccc tgcagagcga
      181 ggactgggcc ctcaacatgg agatctgtga catcatcaat gagaccgagg aaggccccaa
      241 agatgccttc cgagcagtga agaagcgaat tgtggggaat aagaatttcc atgaggtcat
      301 gctggccctt acggtcttgg aaacttgtgt taagaactgc gggcaccgct tccatgtcct
      361 ggtggccagc caggactttg tagagaatgt gctggtgagg accatcctgc cgaagaacaa
      421 tccacccacc atcgtgcatg acaaggtgtt gaacctcatc cagtcctggg cagacgcatt
      481 ccgcagctca cctgatttga caggtgttgt tgctgtctac gaggacctgc gaaggaaggg
      541 cctagaattt cccatgactg acctggacat gctgtcgccc atccatacac cccagagaac
      601 tgtattcaac tcagagacac catccagaca gaaccccgtg gtctccaaca gcagtcatcg
      661 cggagacctg agccagcatg ccaccccact gcccactcca gctgttctcc ctggtgattc
      721 acccatcaca ccaactcctg agcagattgg gaagctgcgc agtgagctgg agatggtgaa
      781 cggaaatgtt cgagtgatgt cagagatgct gacagagctg gtgcccaccc aggtagagcc
      841 cgcagacctg gagctactac aggaactcaa ccgcacctgc cgcgccatgc agcaacggat
      901 cctggagctt atcccacgca tctccaacga gcagctgaca gaggagcttc tcatgatcaa
      961 tgacaacctc aacaatgtgt ttctgcgcca tgaacggttt gaacgcttcc gaacaggcca
     1021 gactgccaag gcctccggtg aagctgagct agcagctgac ctgattgaca tgggccctga
     1081 ccccgcagcc accagcaacc tctcatccca actggcagga gtggaccttg gctccagcag
     1141 ggtgagggct ggcctgcagt ctctggaagc gtctggtcac ctggaagatg actttgacat
     1201 gtttgctctg actcggggca gctccctggc tgatcaacgg aaaggggtca aatacgaggc
     1261 tccccaaacc acagatggcc tggctggggc cctggatgcc cggcagcaga gcaccggggc
     1321 gatcccggcc acacaggccc gcatcatgga ggacattgag cagtggctgt ccaccgatgt
     1381 ggggagcagt gctgaggagc cctctggtgt caccagtgaa gaatttgaca aattcctgga
     1441 agaaagagcc aaagctgccg atcgacttcc caacctggcc agcccttcag ccgagggacc
     1501 ccccagaccg tgtcctggag cagcccctcg gaggaagacg caggagaagg atgatgatgt
     1561 gctgtttgcc ttatgaacgc agcccagccc agggcctgac tctctacccg ctgggcctcc
     1621 ctcccttggc attaaggctg cttaggggtg tttcgttacc ccgcttctct tctcccagag
     1681 cctgggcagc agtgggatga actgaggaac aagtcaaccc tccactggga tcctgactgg
     1741 ttctgccttc ttcccatcct gctaccgact atgactttac tgagacctgg ggccccagac
     1801 gagctgacct gatgcgacct aattgacctg gtgtaaggct gcttccatgg aattcccctg
     1861 ctcccttccc cagagaagcc cacaggagcc cttcagaatc tacactacca gtctaggcat
     1921 tagagaagac atcaccacag cctggcctat cccatccccc tgcagagtgg agcctgaaga
     1981 gggctttagt ggcttattag gaagggcaat ggtggcccct gctgagctgc ccactgtcca
     2041 ggtacgaagc tgcacccagt gaggaaagac ctcactgccc aggtgtcaag atgagacctc
     2101 ggggattctg ggtgcccaga gcccccagtt cctccactgc ctttccccta tccttgcttt
     2161 gttcctccag caagggctcc acccacctgg ggctcatctg ttgattgatg agtcctcagg
     2221 tacagggaga ggtgcctttt gtatccccaa ataaaagtag aaaacca
//
