LOCUS       NM_001008365            2241 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus target of myb1 membrane trafficking protein
            (Tom1), mRNA.
ACCESSION   NM_001008365 XM_341647
VERSION     NM_001008365.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2241)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   2  (bases 1 to 2241)
  AUTHORS   Katoh,Y., Imakagura,H., Futatsumori,M. and Nakayama,K.
  TITLE     Recruitment of clathrin onto endosomes by the Tom1-Tollip complex
  JOURNAL   Biochem Biophys Res Commun 341 (1), 143-149 (2006)
   PUBMED   16412388
REFERENCE   3  (bases 1 to 2241)
  AUTHORS   Seet,L.F., Liu,N., Hanson,B.J. and Hong,W.
  TITLE     Endofin recruits TOM1 to endosomes
  JOURNAL   J Biol Chem 279 (6), 4670-4679 (2004)
   PUBMED   14613930
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On May 27, 2021 this sequence version replaced NM_001008365.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083873.1, SRR26643292.60632.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-123               JAXUCZ010000019.1  13411244-13411366
            124-208             JAXUCZ010000019.1  13426247-13426331
            209-287             JAXUCZ010000019.1  13428441-13428519
            288-437             JAXUCZ010000019.1  13429604-13429753
            438-572             JAXUCZ010000019.1  13430019-13430153
            573-719             JAXUCZ010000019.1  13430244-13430390
            720-836             JAXUCZ010000019.1  13433123-13433239
            837-970             JAXUCZ010000019.1  13435262-13435395
            971-1004            JAXUCZ010000019.1  13436292-13436325
            1005-1098           JAXUCZ010000019.1  13436667-13436760
            1099-1219           JAXUCZ010000019.1  13438296-13438416
            1220-1295           JAXUCZ010000019.1  13441584-13441659
            1296-1355           JAXUCZ010000019.1  13444327-13444386
            1356-1395           JAXUCZ010000019.1  13445156-13445195
            1396-2241           JAXUCZ010000019.1  13445284-13446129
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19p11"
     gene            1..2241
                     /gene="Tom1"
                     /note="target of myb1 membrane trafficking protein"
                     /db_xref="GeneID:361370"
                     /db_xref="RGD:1308024"
     exon            1..123
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..1550
                     /gene="Tom1"
                     /note="target of Myb protein 1; target of myb1 homolog"
                     /codon_start=1
                     /product="target of Myb1 membrane trafficking protein"
                     /protein_id="NP_001008366.1"
                     /db_xref="GeneID:361370"
                     /db_xref="RGD:1308024"
                     /translation="MDFLLGNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETE
                     EGPKDAFRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVENVLVRT
                     ILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLS
                     PIHTPQRTVFNSETPSRQNPVVSNSSHRGDLSQHATPLPTPAVLPGDSPITPTPEQIG
                     KLRSELEMVNGNVRVMSEMLTELVPTQVEPADLELLQELNRTCRAMQQRILELIPRIS
                     NEQLTEELLMINDNLNNVFLRHERFERFRTGQTAKASGEAELAADLIDMGPDPAATSN
                     LSSQLAGVDLGSSRVRAGLQSLEASGHLEDDFDMFALTRGSSLADQRKGVKYEAPQTT
                     DGLAGALDARQQSTGAIPATQARIMEDIEQWLSTDVGSSAEEPSGVTSEEFDKFLEER
                     AKAADRLPNLASPSAEGPPRPCPGAAPRRKTQEKDDDVLFAL"
     exon            124..208
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            209..287
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            288..437
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            438..572
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            573..719
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            720..836
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            837..970
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            971..1004
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1098
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            1099..1219
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            1220..1295
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            1296..1355
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            1356..1395
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
     exon            1396..2241
                     /gene="Tom1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgacgggtc ggcggcgccg gcggttgctg tcacctgatt ctgggagctg gtggcagtgg
       61 tagccgcggc aatggacttt ctcctgggaa acccgttcag ttctcccgtg ggacagcgga
      121 tcgagaaagc tacagatggc tccctgcaga gcgaggactg ggccctcaac atggagatct
      181 gtgacatcat caatgagacc gaggaaggcc ccaaagatgc cttccgagca gtgaagaagc
      241 gaattgtggg gaataagaat ttccatgagg tcatgctggc ccttacggtc ttggaaactt
      301 gtgttaagaa ctgcgggcac cgcttccatg tcctggtggc cagccaggac tttgtagaga
      361 atgtgctggt gaggaccatc ctgccgaaga acaatccacc caccatcgtg catgacaagg
      421 tgttgaacct catccagtcc tgggcagacg cattccgcag ctcacctgat ttgacaggtg
      481 ttgttgctgt ctacgaggac ctgcgaagga agggcctaga atttcccatg actgacctgg
      541 acatgctgtc gcccatccat acaccccaga gaactgtatt caactcagag acaccatcca
      601 gacagaaccc cgtggtctcc aacagcagtc atcgcggaga cctgagccag catgccaccc
      661 cactgcccac tccagctgtt ctccctggtg attcacccat cacaccaact cctgagcaga
      721 ttgggaagct gcgcagtgag ctggagatgg tgaacggaaa tgttcgagtg atgtcagaga
      781 tgctgacaga gctggtgccc acccaggtag agcccgcaga cctggagcta ctacaggaac
      841 tcaaccgcac ctgccgcgcc atgcagcaac ggatcctgga gcttatccca cgcatctcca
      901 acgagcagct gacagaggag cttctcatga tcaatgacaa cctcaacaat gtgtttctgc
      961 gccatgaacg gtttgaacgc ttccgaacag gccagactgc caaggcctcc ggtgaagctg
     1021 agctagcagc tgacctgatt gacatgggcc ctgaccccgc agccaccagc aacctctcat
     1081 cccaactggc aggagtggac cttggctcca gcagggtgag ggctggcctg cagtctctgg
     1141 aagcgtctgg tcacctggaa gatgactttg acatgtttgc tctgactcgg ggcagctccc
     1201 tggctgatca acggaaaggg gtcaaatacg aggctcccca aaccacagat ggcctggctg
     1261 gggccctgga tgcccggcag cagagcaccg gggcgatccc ggccacacag gcccgcatca
     1321 tggaggacat tgagcagtgg ctgtccaccg atgtggggag cagtgctgag gagccctctg
     1381 gtgtcaccag tgaagaattt gacaaattcc tggaagaaag agccaaagct gccgatcgac
     1441 ttcccaacct ggccagccct tcagccgagg gaccccccag accgtgtcct ggagcagccc
     1501 ctcggaggaa gacgcaggag aaggatgatg atgtgctgtt tgccttatga acgcagccca
     1561 gcccagggcc tgactctcta cccgctgggc ctccctccct tggcattaag gctgcttagg
     1621 ggtgtttcgt taccccgctt ctcttctccc agagcctggg cagcagtggg atgaactgag
     1681 gaacaagtca accctccact gggatcctga ctggttctgc cttcttccca tcctgctacc
     1741 gactatgact ttactgagac ctggggcccc agacgagctg acctgatgcg acctaattga
     1801 cctggtgtaa ggctgcttcc atggaattcc cctgctccct tccccagaga agcccacagg
     1861 agcccttcag aatctacact accagtctag gcattagaga agacatcacc acagcctggc
     1921 ctatcccatc cccctgcaga gtggagcctg aagagggctt tagtggctta ttaggaaggg
     1981 caatggtggc ccctgctgag ctgcccactg tccaggtacg aagctgcacc cagtgaggaa
     2041 agacctcact gcccaggtgt caagatgaga cctcggggat tctgggtgcc cagagccccc
     2101 agttcctcca ctgcctttcc cctatccttg ctttgttcct ccagcaaggg ctccacccac
     2161 ctggggctca tctgttgatt gatgagtcct caggtacagg gagaggtgcc ttttgtatcc
     2221 ccaaataaaa gtagaaaacc a
//
