LOCUS       XM_017594408            4004 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TOG array regulator of axonemal
            microtubules 2 (Togaram2), transcript variant X1, mRNA.
ACCESSION   XM_017594408
VERSION     XM_017594408.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017594408.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017594408.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4004
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4004
                     /gene="Togaram2"
                     /note="TOG array regulator of axonemal microtubules 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     10 samples with support for all annotated introns"
                     /db_xref="GeneID:313892"
                     /db_xref="RGD:1310677"
     CDS             218..3772
                     /gene="Togaram2"
                     /codon_start=1
                     /product="TOG array regulator of axonemal microtubules
                     protein 2 isoform X1"
                     /protein_id="XP_017449897.2"
                     /db_xref="GeneID:313892"
                     /db_xref="RGD:1310677"
                     /translation="MAPASVCYTFLGAAVTQWIPADSSMLACVIPPPCLTALEDSLAS
                     GACPAPGGATGEMRPRGKVLALSLSPTRGLGLLQRAVAMQRCLFKRSLAESRSVPAAA
                     VGFLVPAWTGGRGLRLLSWARAKAGQGPGCHRPASFGSRRPALRAQGQLLPLRSLVGT
                     FPTQGMDTRDDVTLAKVVAPVAVYCGSVPRTSVGLRAPPPGSIDSSEASPQPVSSVLP
                     SSEKPSQLLSGHEDQSSLTLDAPLKGWQARNGYPRNLRALPLGPHPLAVIPSLESEAS
                     SVARDTIQIKDKLKKRRLSEGMAASSQVSLDPVGGPKGVPLRSTIPRTASQRLLRVPR
                     PMPPIQSIPTTPEANSAKEKDLDPPGGRPGAGAQEVQISRQYLHCADEKMHKSLGGIV
                     IPPIPKARMPTGTSSCRPGSRSSPLCPGQDGLMGTRAPPTRLTCENGPLEKTPKSLAP
                     KPLVPAVKAKSAEAPPTSLASSQSTFTLTAFSSHAKETRSLTNEEDQRESSTKVQVTI
                     SKSAQEKMRLKQLKEMELLRRAKEPERERELASQGLGTWRTSAKEGLLPLRGSGTLSE
                     PTGMSSPRRNNIGVLQRKRANRASLPNIPVSKQEPGFARHASANSLPAMLTLGSPEWE
                     EEEEEEMDLQALREFRPFSNPELGLTEALQCLSSNDWQMKEKGLVNIQRLAACHSEVL
                     GTRLHDVSLAVTAEVTNLRSKVSRLAISTLGDLFRALKKSMDQEAEEIVRCLLQKMGN
                     TSEFIQRAANRALGAMVENVTPARALVALTSAGVYHRNPLVRKCTAKHLSAVLEQIGA
                     EKLLSGSRDNTDMLVHNLVRLAQDSNQDTRFYGRKMVNILMANAKFDAFLKQSLPSHD
                     LRKVMAAIKQRGIQDNHELPSAKGRKVLKSLVVCENGLPSQEGGQPLLPPRLGSNGPR
                     LVGLRSSMRGGVEMAEQLRELTRLLEAKEFQARMEGVGKLLEYCKTKPEHVAANLVQV
                     FDAFTPRLHDSNKKVNQWALESLAQMLPILRESIHPMLLSLIIVAADNLNSKNSGIST
                     AASTVLDAMMDSLDHLCLLQAFAGRVRFLTGPAVLDVTDRLSALVASVYPRKPQAVER
                     HILPVLWYFLNKMTGNGVLPGRGGNVRTAVCRLARSLQEQMGSRLQDFAANQPQQALK
                     TLQGLLVSESLGDNNKVTSGGMAPDIQMTGAICPQQLD"
ORIGIN      
        1 aaacacggct ggggaggaca ccacggcttt ctgctatgta aatatttctg gagagataaa
       61 cagagggcct actttattct agacagaccc ccatgctgct tcttcttggc agctatttaa
      121 gcctgatatc aactctacga ggaccatttt atagacgggg aatcctacct gggcctctgc
      181 tcactagttt gcctccgtgt gcatagattc agtgcctatg gctcctgcct cagtctgcta
      241 tacgtttctc ggtgcagccg ttacccagtg gatcccagca gactctagca tgcttgcgtg
      301 tgtcatccct cccccatgcc tcacggccct agaggacagt ttggcctctg gggcatgccc
      361 agcacctggg ggagccacgg gggaaatgag accgagggga aaagtcttag ctctctctct
      421 ctcccccaca cggggacttg ggctccttca gagagcggtt gccatgcagc ggtgtttatt
      481 caagaggagc ctggcagaga gcaggagtgt gccagcagcg gctgtgggct ttcttgtacc
      541 tgcttggacg ggaggccgtg gcctcaggct cctaagctgg gccagggcca aggcaggcca
      601 gggccccgga tgtcacagac cagcgtcctt tggatcccgg aggcctgcac tcagggccca
      661 gggacaactg ctacctctaa gaagcctggt gggcaccttc cccacccagg gcatggacac
      721 ccgtgatgat gtcactctag ccaaagttgt ggctccggtg gccgtgtact gtgggagtgt
      781 ccctcggact agtgttggcc tccgagcgcc cccacctgga agcatcgact ccagtgaagc
      841 ctctccgcag ccggtgtcaa gtgtcctgcc aagcagtgag aagccatcac agctcttgag
      901 tggacatgag gaccagagca gcctcacgct ggatgctcct ttgaaaggct ggcaggccag
      961 gaatggctac cccaggaacc tcagagctct gcccttgggg ccccacccct tggcagttat
     1021 cccctccttg gaatcagagg ccagcagtgt ggcccgggac actatccaga ttaaggacaa
     1081 actcaagaag agacggctgt cggaaggcat ggcagcatct tctcaagtct ctctggatcc
     1141 ggtgggaggc cccaaaggag ttcctctgag gagcaccatt ccccgtactg cctcacagag
     1201 gctcctgagg gtacccaggc caatgcctcc catccagagc atccccacaa cccctgaggc
     1261 caacagtgcc aaggagaagg acctggaccc gcctggaggc agaccaggag ccggtgccca
     1321 ggaggtgcag atttccaggc aatacctgca ctgtgcagat gagaagatgc acaagtcttt
     1381 gggcggcatc gtgatcccgc ccattccgaa ggcccggatg cccacgggga cctcttcctg
     1441 caggcctggc tcccgttcca gccctttgtg tccaggccaa gatgggctta tgggaacaag
     1501 ggccccacct acccgattga cttgtgagaa cgggcctctg gaaaagaccc ctaaatctct
     1561 ggcgccaaag cctttggtcc cagctgtcaa agccaagtct gctgaagccc ctccaacgtc
     1621 cctggcttcg tcacagtcca cctttactct gacagcattc tccagccatg ccaaagaaac
     1681 ccgctccctg acgaacgaag aagaccagag ggagtccagc accaaggtcc aagtcaccat
     1741 ttccaagtct gcccaggaaa agatgcgact gaagcagctg aaggagatgg aactgcttcg
     1801 gagggcaaag gagccagagc gggagcgaga actggcttcc cagggcttag gcacatggag
     1861 aacctcagca aaggaaggcc tccttccttt aaggggcagt ggaaccctgt cagagcccac
     1921 tgggatgagc agtccacgca gaaacaacat aggagtcctc cagaggaagc gggctaaccg
     1981 agcctccctg cccaacatcc ctgtcagcaa acaggagcct ggctttgccc gccatgcatc
     2041 agctaactca ttacctgcca tgcttacctt gggttctcct gaatgggagg aagaggagga
     2101 agaggagatg gatcttcaag ctctcaggga gttcaggccc ttctccaacc cagagctggg
     2161 gctgacagaa gcccttcagt gcctcagcag caatgactgg caaatgaagg agaagggctt
     2221 ggtgaacatc cagcgcctgg cggcttgtca ctcggaggtc ctcggtacac gactgcacga
     2281 tgtgtccttg gcagtgactg cagaggtcac caacctacgc tccaaggtat cccgcctggc
     2341 catcagcacc ctgggagacc tcttccgagc tttgaagaag agcatggacc aggaggctga
     2401 ggagattgtc cgctgccttc tgcagaagat ggggaacacc agcgagttca tccagcgggc
     2461 agccaaccgg gctctgggcg ccatggtgga aaatgtgacc cctgcccgtg cactggtggc
     2521 cctcacatct gcgggtgtct accaccggaa ccccttagtc cggaaatgta ctgccaagca
     2581 tctctcagcc gtcctggagc agattggagc agagaaactt ctctcgggct ccagagacaa
     2641 cacggacatg ctggtgcaca acttagtgag gttggcccag gactctaacc aagacaccag
     2701 gttttacggc cggaagatgg tgaatatctt gatggcaaac gcaaagtttg atgcatttct
     2761 gaagcaatcc ctcccatctc atgacctacg gaaagtcatg gcggccatta aacaacgggg
     2821 aatacaagac aatcacgaac tcccatctgc caaaggtcga aaagtgttga agagtctggt
     2881 ggtgtgtgag aacggactgc ctagtcaaga ggggggtcag cccctgcttc cccctaggct
     2941 tggctccaat ggccctcggc tggtggggct ccgctcctcc atgcggggtg gtgtggagat
     3001 ggcagagcaa ctgcgggagc tgaccaggct gttggaggcc aaggagttcc aggctcgcat
     3061 ggaaggcgtt gggaagctcc ttgaatactg caagaccaag ccagaacatg ttgctgccaa
     3121 cctagtccag gtctttgatg cttttacccc aaggcttcac gattctaaca agaaagtgaa
     3181 ccagtgggcg ctggaatccc tcgcacagat gcttcccatc ctgagagaga gcatccaccc
     3241 catgctgctg tccctcatca tcgtagctgc agacaacctc aactctaaga actctgggat
     3301 ttccactgct gcctccactg tgctggatgc catgatggac agcctggacc acctgtgcct
     3361 cctgcaagca tttgctggac gcgtgcgttt cctgactggt cctgcagtgc tggatgtcac
     3421 agatcgcctc tcagcgctgg ttgcctcggt gtaccccaga aagccgcagg ctgtggagcg
     3481 gcacatcctt ccagtcctct ggtacttcct gaacaaaatg accggcaacg gcgtgctgcc
     3541 tgggcgtggc gggaacgtcc gcacagcggt gtgcaggctg gccaggagtc tgcaggagca
     3601 aatggggtcc cgcctgcagg acttcgctgc taatcagccc cagcaagccc tcaagacact
     3661 ccagggactt ttagtctctg aatctctggg ggacaacaac aaggtcacca gtggaggaat
     3721 ggcccctgac atccagatga ctggagccat ctgtccccag cagctggatt aaggatggat
     3781 ctgaaatggg cgattattat tttctacctt attttatttt tatggcggag tcacctcatg
     3841 gcctatgttt ccccttaggg tccccaatgt atgtatatag tatattttga agtagaataa
     3901 aagaattgct tatttttcta aggttttctt atcttacttt ttttttttta accacagaga
     3961 attttccagt agacaggttt gtgaaccaag ccaatctcga actt
//
