LOCUS       XM_234236               6589 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TOG array regulator of axonemal
            microtubules 1 (Togaram1), transcript variant X1, mRNA.
ACCESSION   XM_234236
VERSION     XM_234236.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_234236.11.
            
            On Jan 21, 2021 this sequence version replaced XM_234236.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6589
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6589
                     /gene="Togaram1"
                     /note="TOG array regulator of axonemal microtubules 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 34 ESTs, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 141 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:314169"
                     /db_xref="RGD:1310474"
     CDS             217..5697
                     /gene="Togaram1"
                     /codon_start=1
                     /product="TOG array regulator of axonemal microtubules
                     protein 1 isoform X1"
                     /protein_id="XP_234236.4"
                     /db_xref="GeneID:314169"
                     /db_xref="RGD:1310474"
                     /translation="MAAAPSELLPLPPLATTGSYRLLSRCRPSAPGTDGRRSGGTMRG
                     EKSYYCRGAAGDHGSCPATPSPLSSTLLLPAEAISTSWSGPGGGLSSGDEEETRLLQL
                     LRTAPDPSEAFQALQAALPRRGGRLGFPRRKEALYRALGRVLVEGGSDEKRLCLQLLS
                     DVLRGQGEAGQLEEAFSLALLPQLVVSLREDNPALRKDALQILHICLRRSSGQVLRTL
                     IQGLESPDARLRASTALLLPILLTPEDLLLGLDLTEVIISLARKLGDQEMEEESETAF
                     STLQQIGERLGQERFHSYISRLPSALRRHYNRRLESQYGSQVPYYLELEASGFSEDAA
                     PCVVNLSSSNLKFGIIPQELHARLLDQEDYKNRTQAVEELKQLLGKFNPSSTPHSSLV
                     GFISLLYNLLDDSNFKVVHGTLQVLHLLVIRLGEQVQQFLGPVIAASVKVLADNKLVI
                     KQEYMKIFLKLMKEVGPQQVLSLLLENLKHKHSRVREEVVNICICSLLTYPSEDFDLT
                     KLSFDLAPALVDSKRRVRQAALEAFAVLASSMGSGKTNVLFKAVDTVELQDNGDGVMN
                     AVQARLARKTLPRLTEQGFVEYAILMPSSAQGRSSHLAHGADTDWLMSGNRTQSAHCY
                     CGDHTRDSMQLYGSYSPTICTRRVLSAGKGKNKLPWENEQPGVMGENQTSNSKDIKDT
                     EQFSAHDLIPSPKLKPSQGMPVNDDLCFSKKRSSRNLFQSSRDFNSDSIPTCGAGNTA
                     TLQTNLPGKCGQLGLSQIGCKTGSVGSDLQFLGTANGHQDKVCASLNFGSKSQQTFGS
                     QSERTSSYSGSNASPGPFILPSYPLSSPRTSPKHASPLSVSPKKSQDNSTSFSNSWPL
                     KSFEGLSKPSPQKKLANQKSSNPTGENFQEKTTPVQLIPSLVRSPSSRRGLNGTKPVP
                     PIPRGISLLPDKADLSTVGHIKKQPDDIWKSEKDNLTIDLSELNFRDKDLDQEEMQSS
                     LRSLRNSAAKKRAKLSGSSSTSDVDSPDSAMKLELTIDSPSRSSSPNISSYSESGVYS
                     QESLTSSLSTTPQGKRIMSDIFPTFGSKPCSTRLSSAKKISPAAEQSSSAGITTSSVS
                     IIGQRMNYGFGCGDFEEDRSHDILPSALKIQNKEHPRHKHTKGFTRSSNLQQISSFDF
                     TATNTLSEDSVVIVGKGVFGNPNSAPTTCNQPVISSVENEDTFSVKPSIEPPSGIYGR
                     AVQQNTPLYLDVENDKDTKVSIAKSTYDKMRQKRKEEKELFDAKDCERKETSPWERIK
                     HPGTEKMTSENEPSPGVIPQYKERMSSVTHSPEIMDSLELRPFSKPEIALTEALRLLA
                     DEDWEKKMEGLNFVRCLAAFHSDLLNTKLHETTFAVVQEVKNLRSGVSRAAVVCLGDL
                     FTYLKKSMDQELDTAVRALLHKAGESNTFIREDVDKALKAMVNNVTPARAVISLINGG
                     QSHLHIAVRRCTAQHLADVVECMEPERISSGAKDMAERLLPAAAKFAQDSSQETRYYG
                     RKMLFLMMGHPNFEKLLEKYIPSKDLPYIKESVKNLRQKGLGEIPLDTPSAKGRRSHT
                     GSVGNTRSSSVSRDAFSSSEREVTEVREVPRKSAPRNSLESAEYIKVITGLLNAKDFR
                     DRINGIKQLLSDTENNQELVVGNIVKIFDAFKSRLHDSNSKVNLVALETMHKMIPLLR
                     DNLSPIINMLIPAIVDNNLNSKNPGIYAAATNVVHALSQHVDNYLLLQPFCTKAQFLN
                     GKAKQDMTEKLADIVMELYQRKPHATEQKVLVVLWHLLGTMTHSGSLPGAGGNIRTAT
                     AKLSKALFTQMGQNLLNQAASQPPHIKKSLEELLDVTVLSEL"
ORIGIN      
        1 cgggtggcgg ctgtggggtc ccaggctcag cgggggccat tttgccggag gctggctccg
       61 ggagtcgaag gccgcagtgg cctggcagct gaccggagcc gttccttctt ttcctctgca
      121 gctcggggct tggagaggag ctggaaggct gggcttcatc cagccctccc aagacggcaa
      181 tggttccctc cagctctcgc tatttgacga ccctccatgg cggccgcgcc ttccgagctg
      241 ctccctctgc cgcctcttgc aaccactggt tcctatcgcc tcctgagccg ctgtcgtcct
      301 tccgccccag ggactgatgg tcgtcgatct gggggcacaa tgagaggcga gaaaagctac
      361 tactgccgtg gggctgctgg ggatcatggc tcctgccccg cgacaccatc gcctctgtcc
      421 tcgacccttc tgttaccggc ggaggctatt tcaactagct ggtccggtcc tgggggtggg
      481 ctgtcgagcg gagatgagga ggagactcgg cttcttcaac tcctgcgcac cgcaccggat
      541 ccttccgagg cgttccaggc tttgcaggct gccttgccgc ggcggggcgg ccggcttggc
      601 tttccccgcc gcaaggaagc cttatatcgg gcgctgggcc gagtgcttgt ggaaggcggt
      661 agtgatgaga agaggctgtg cttgcagctt ctctcggatg ttcttcgggg tcagggcgag
      721 gcgggtcagc tggaagaagc ctttagttta gcgcttttgc ctcaactagt tgtctcattg
      781 cgagaagata accctgccct acggaaagat gcgctgcaga tcctgcatat ctgtctgaga
      841 cgtagttcag ggcaggtcct gagaactctt atacaaggcc tggaaagtcc agatgcccgt
      901 cttagagctt ccactgcgct gttgctccct atcttgctta ctcctgagga tttgttactg
      961 ggcttggatc tcactgaagt aataatatct ctggcccgaa agcttggcga tcaggagatg
     1021 gaagaagaat ctgagacagc attctcgaca cttcaacaaa ttggagaacg acttggtcaa
     1081 gagaggtttc actcctacat ctctcgtttg ccctctgcgc taaggagaca ctacaatcgt
     1141 cgcctggagt cccagtatgg aagtcaggtt ccttattatt tggagctaga agcctctggg
     1201 ttttctgaag atgctgcccc atgtgtagtg aatctttcca gtagtaatct taaatttggg
     1261 attattcctc aggaactgca tgcaagattg ttggatcagg aagactataa aaacaggact
     1321 caggctgttg aagaactaaa acagttgctg ggaaaattta acccaagttc tacccctcat
     1381 tctagtcttg ttggtttcat tagcttattg tataacttgc tagacgattc caatttcaaa
     1441 gtggtccatg gcacacttca agttctccat ttactggtta ttcgcctggg agagcaggtg
     1501 caacagttct tgggaccagt tatagcagct tctgtgaaag tgctggcaga caacaagttg
     1561 gtgatcaagc aggagtacat gaaaatcttt ctaaagctta tgaaagaagt aggccctcag
     1621 caggtacttt ctttgctcct ggaaaaccta aaacataagc attccagagt acgggaggaa
     1681 gtagtgaaca tttgtatctg ttccctcctg acctacccca gtgaggattt tgacttaacc
     1741 aaactgtcct ttgatcttgc tccagctctt gtggatagca aacgcagggt ccgccaggca
     1801 gctctggaag cctttgctgt tttggcatca tcaatgggct cagggaaaac caatgttctt
     1861 tttaaagctg tagatactgt tgaattgcag gataatggcg atggagtgat gaatgcagtg
     1921 caggctcgac tggccaggaa aactcttcca cggcttacag aacaggggtt tgtggagtat
     1981 gcaattctca tgccgtcttc tgcccagggt aggtcaagcc atttggcaca tggagcagat
     2041 acagactggc ttatgtctgg taacaggact cagagtgcac actgctactg tggtgaccac
     2101 accagggaca gtatgcaact gtatggatcc tacagtccaa ctatctgtac ccgaagggtt
     2161 ttaagtgctg gaaaagggaa aaataaatta ccatgggaaa atgagcagcc tggagtcatg
     2221 ggagaaaacc agacctccaa ttccaaggac attaaagata cagagcagtt ttcagctcat
     2281 gaccttatcc catctccaaa attaaagccc tctcaaggaa tgccagtcaa tgatgattta
     2341 tgttttagca aaaaaaggtc atcaagaaac ttatttcaga gtagtcggga ttttaactca
     2401 gattcaattc ctacatgtgg tgctggtaat actgcaactc ttcagacaaa tcttcccggg
     2461 aaatgtgggc aacttggatt gtcacagata ggttgtaaaa ctggcagtgt gggttctgac
     2521 ttacagttcc tggggacagc caatggccat caagataaag tatgtgctag ccttaatttt
     2581 ggcagtaagt cacagcaaac atttggtagt caatcagaac gaacttcttc atactctggt
     2641 tcaaatgcaa gcccaggacc ttttattctt ccatcctatc ctctctcctc acctcgaact
     2701 agtccaaagc acgcatctcc tctttctgtg tctccaaaga agtctcagga taattccact
     2761 agtttctcca actcttggcc tcttaagagc ttcgaaggac tatcaaagcc aagtccacag
     2821 aaaaagcttg ccaaccagaa atcatccaac cctacaggag aaaattttca agaaaaaact
     2881 actccagttc aactcatacc ttccttggtg agatcacctt cttcccgaag aggcctaaat
     2941 gggacaaaac ctgtccctcc cataccaagg ggaataagcc ttttgcctga taaagctgac
     3001 ttaagcacag tgggacacat aaagaagcag cctgatgata tttggaaaag tgaaaaagat
     3061 aatcttacaa ttgatctttc agaattgaat ttcagagata aagatttgga tcaggaagag
     3121 atgcagagct ctcttaggtc ccttcgtaat agtgcagcta agaaaagagc caaactgagt
     3181 ggcagcagca gtacctctga tgtcgacagt cccgactctg ccatgaagct tgagctgacc
     3241 attgactccc cgtcccgatc ctcttctcca aacatcagct cttacagtga aagtggagtt
     3301 tatagccaag aatcattgac gtcttctctt tctacgactc cccaggggaa gagaataatg
     3361 tcagacatat ttccaacatt tggatcaaaa ccctgttcaa caagactttc ttctgcaaag
     3421 aagatctccc ctgctgctga acagagttcc agtgcaggga taactacatc cagtgtaagc
     3481 ataattggtc aacgtatgaa ctatgggttt ggatgtggtg attttgaaga ggataggtca
     3541 catgacattt tacctagtgc tttaaaaata caaaataagg aacatccaag acataagcat
     3601 acaaaaggat ttacaaggtc atcaaattta cagcagattt ctagttttga cttcacagct
     3661 acaaatacct tatcagaaga ctcagtagta attgttggaa aaggtgtatt tggaaatcca
     3721 aattcagcac caacaacttg caaccagcca gtgatatcct ctgtggaaaa tgaggatacc
     3781 ttttcagtga aaccaagcat tgaaccacct tcagggattt atggaagagc agtccagcaa
     3841 aatactccac tctatcttga tgttgaaaat gacaaagata ctaaagtttc tattgcaaaa
     3901 tctacttatg acaaaatgag acaaaagaga aaggaagaaa aagaactttt tgacgctaaa
     3961 gattgtgaac ggaaagaaac aagtccctgg gaacgaataa aacatccagg aactgagaaa
     4021 atgacatctg agaatgaacc atctcctgga gtcattccac aatataaaga aagaatgtct
     4081 tctgtcactc acagtccaga gataatggat tcattagaat tacggccatt ttctaaacca
     4141 gaaatagcac ttacagaagc cttacggctg ttagctgatg aggactggga gaagaagatg
     4201 gaggggctga attttgtccg atgcttagct gcttttcact ctgacctttt gaacacaaaa
     4261 ttacatgaaa caacctttgc agtagttcaa gaggtgaaaa atttacgctc tggagtgtcc
     4321 cgtgctgctg tggtgtgctt aggtgatctt tttacatacc tgaaaaagag catggatcaa
     4381 gaactagata ctgcagtcag agctttgttg cacaaggctg gagaatcgaa tacattcata
     4441 agggaagacg ttgacaaggc attgaaagct atggttaata atgtaactcc tgcacgtgca
     4501 gtcatttctc tcatcaatgg aggacaaagc catctgcata ttgcagtaag aagatgtaca
     4561 gcccagcact tggcagatgt agtagaatgt atggaaccag agcgaatttc atcgggagca
     4621 aaggatatgg ctgaacgttt attgcctgct gctgccaagt ttgctcaaga cagctcacaa
     4681 gaaaccaggt attatggtcg aaagatgctt ttcctcatga tgggtcatcc taactttgaa
     4741 aaactacttg aaaagtatat cccatctaaa gatttgccat atattaaaga atccgttaaa
     4801 aatttacggc aaaagggttt gggagagata ccactagaca ccccatcagc aaaaggaagg
     4861 cgatctcata ctggtagtgt cgggaacaca agatcatcat cagtttctcg agatgctttc
     4921 agttcttctg agagggaagt aactgaagtt cgagaagtcc ccagaaaatc agctcctcgt
     4981 aattccttag aaagtgctga gtatattaaa gtcataacag ggctattaaa tgcaaaagac
     5041 tttcgtgatc gtattaatgg gattaaacaa cttttatcag acactgaaaa caatcaagag
     5101 cttgttgtag gcaacattgt gaagatcttt gatgctttta agtctcgact tcatgattct
     5161 aacagcaaag tgaatctggt ggctctagaa acaatgcata aaatgattcc tttgcttaga
     5221 gacaacttgt ctcctataat caatatgcta attcctgcaa ttgtggataa caatctgaat
     5281 tccaagaatc caggcatcta tgctgcagcc acaaatgttg ttcatgccct gagtcaacat
     5341 gtagataatt acttgcttct acagccattt tgcacaaaag ctcagtttct aaatggaaaa
     5401 gcaaaacaag atatgacaga aaagcttgct gatattgtca tggagcttta tcaaaggaag
     5461 cctcatgcca cagaacagaa agtgctggtg gttttatggc acctcttagg aactatgaca
     5521 cacagtggct ccctgcctgg agctggcgga aatatacgaa cagccacagc taaattatca
     5581 aaagcacttt tcacacagat gggtcagaat ctattaaatc aggctgcatc tcaaccacca
     5641 catatcaaaa aaagtttaga ggaattactt gatgtgacag ttttaagtga attatgagtt
     5701 tttaatgaac tagttatgat gaacaattta tgtgatgaca gatgaaatct ttttaaagtt
     5761 acatttttta ttttgagtgc ctgaatttca tgtccagtaa attaagtcag gggctttgta
     5821 tatttgctgc ctacctgtga gtacagatct gtccttatag ccatcacatg aaaacctaaa
     5881 ataatgaata taaattaata ggaaatataa actgatatga aatctgtggc acctgggatg
     5941 aactaaattt tacatgtttt tgggaaaagt cctgctcatt tgcactattc tatagaaact
     6001 gcaatttgtt gccccatatg tacaattaga tttgtaatta aaaatatact ttttattatg
     6061 taatcatgtt ctgctatgtc tcattactct gccttgtttt ataaagtgga agaaaagtca
     6121 attaactgtt atcacaaaat aagctttgtg tgctgattgt gaataacatg tttttgaatc
     6181 agtctgctaa tctgattatg cagtattagc ttcctatagc tgctgtttat atatatatat
     6241 atgtatacat atatatatgc gctaaacttt tgggtttaat catctgcaca attgtgaaat
     6301 ttaagagtta taataaagca tgatgaccaa agcttagaaa acattaaaca tttgaatgca
     6361 cgttcaagaa acgtgctgaa tgtaacttta tttttgtgtg caaacactaa atttttaatt
     6421 tgtgtatgtc tgtccattta taaaggtgtt attttgctgc ccatttgtgt aattctcaaa
     6481 aatagtgcca ggtcttctat agtttttctc agaattcttg ggcttacaag tactgtatgc
     6541 atcttaaaga agaaaaggaa tgtttaaaat aaaaggattt atttctgta
//
