LOCUS       XM_039107279            3057 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transportin 3 (Tnpo3), transcript
            variant X1, mRNA.
ACCESSION   XM_039107279
VERSION     XM_039107279.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107279.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3057
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3057
                     /gene="Tnpo3"
                     /note="transportin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 15 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 91 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:296954"
                     /db_xref="RGD:1308938"
     CDS             388..3042
                     /gene="Tnpo3"
                     /codon_start=1
                     /product="transportin-3 isoform X1"
                     /protein_id="XP_038963207.1"
                     /db_xref="GeneID:296954"
                     /db_xref="RGD:1308938"
                     /translation="MEGAKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAW
                     EISDQLLQIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSP
                     VIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLR
                     IGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNF
                     MANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTL
                     ETAYHMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHP
                     QYEVVEISFNFWYRLGEHLYKTNDEVIHSIFKAYIQRLLHALARHCQLEPDHEGVPEE
                     TDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKS
                     VDPENNPTLVEVLEGVVHLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMK
                     GLCEKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIAHSLDSFMLSPEAAVGLLKGTA
                     LVLARLPLDKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTNP
                     IVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQ
                     PLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQN
                     GLQNHPDTVDDLFRLATRPRSQPKEWCHPQCVGLPTSVNLIKIIPHRNAQNPVSQVII
                     DLIELKLRLTISLPTSHLFINKSSQHNSVKSVVYLFVLLSWYVQPCTHTHTHTHTHTH
                     THTHTHTHTLSLSLSLSLSLSPPEWPIY"
ORIGIN      
        1 tacaggcgac cgcttccggt ctggagaagc tctgcttagg ttcgctgcgt ggtttgtgtc
       61 atgcggaggt aggcctttga gagcaaggcg ggaggtgtgg aagcaagaac ccgcatccgg
      121 actctagagt ctgggattct ggcgggaaga caagacaaaa aggagccagg aacctgaaaa
      181 cgacctatcc gctgtttccg agggggcaac ttccacgagg aaccccaccc cccccacccc
      241 ttccctggta acggccagaa aagaggagat ggcgccagtc agggagcggc tgtggccgag
      301 acagtgagga cgcttgaagg cagagcaagc ggaagccttg ggagaagtat cggactcttc
      361 gctgtcatcg ccgccgcttc caccaccatg gaaggagcca agccaacctt gcagctcgtg
      421 taccaggcgg tgcaggcgct ttaccacgac ccagatccca gcggaaagga gcgcgcctcg
      481 ttttggcttg gggagctgca acgttcggtt catgcgtggg agatttctga tcaattgtta
      541 cagatccgac aggatgtgga atcatgctat ttcgctgccc agaccatgaa aatgaagatt
      601 cagacctcat tttatgagct tcccacagac tcccatgctt ctttaaggga ctcattgcta
      661 actcatattc agaacttgaa agacttgtca cctgtcattg taacacagct ggctttagca
      721 atagcagacc ttgccctaca gatgccttct tggaagggat gcgtacaaac attggtagaa
      781 aaatatagca atgatgtaac ttctttgcct tttttgctgg aaatccttac agtgttacct
      841 gaagaagtac acagtcgttc cttgcggatt ggagccaaca ggcgcacaga aattatagaa
      901 gacttagcct tctactctag tacagtggtt tctttattga tgacatgtgt agagaaagca
      961 ggaactgacg agaagatgct tatgaaggtc ttccgatgtt tgggaagttg gtttaacttg
     1021 ggagttttgg acagtaactt catggctaat aataagttat tagcactcct ttttgaggtt
     1081 ttgcaacaag ataagacctc atctaaccta cacgaagctg cttctgactg tgtgtgctcc
     1141 gctctctatg ctattgaaaa tgtagagact aacttgccat tggccatgca gctttttcag
     1201 ggcgtcctga cactggagac tgcctatcat atggctgtgg cacgggaaga tttagacaaa
     1261 gttctgaatt actgccgtat cttcaccgaa ctatgtgaaa cttttctgga aaaaattgtc
     1321 tgtactccag gccaaggtct gggagatctt cgaactttgg aattgcttct tatctgcgca
     1381 ggccaccctc agtatgaggt agtagaaatt tcctttaact tttggtaccg gctaggagaa
     1441 catttataca aaaccaatga tgaagttatt cacagcatct tcaaagcata tattcagagg
     1501 ctgcttcatg ccttggctcg acactgccag ttggaaccag accatgaagg agttcctgaa
     1561 gagactgatg actttgggga gtttcgaatg agagtgtcag acctggtgaa ggacttgatt
     1621 ttcttgattg gatctatgga gtgctttgct cagttgtact ctactctgaa ggaaggcaat
     1681 ccaccctggg aggtgacaga agcggtcctc tttatcatgg ctgctatagc aaagagtgtt
     1741 gatccggaga acaatcctac actcgtggag gtactggagg gagttgtcca tctcccagag
     1801 actgtgcaca cagctgtgcg ctacaccagc attgagttgg ttggtgaaat gagtgaagtg
     1861 gtggaccgaa atcctcagtt tctggatcct gtattgggct atttgatgaa aggcctgtgt
     1921 gaaaagcctc tggcttctgc tgcagccaaa gccattcata acatttgttc cgtttgtcgg
     1981 gatcatatgg ctcagcactt taatggactc ctagaaattg cccactccct tgattctttc
     2041 atgttgtctc ctgaagccgc tgtgggtttg ctaaaaggaa cagctcttgt cctagcaaga
     2101 ctacctttgg ataagatcac tgaatgtctt agtgagttat gttctgttca ggttatggca
     2161 ttgaaaaagc tgttgtctca ggagcccagc aatggcattt cttcagatcc cactgtcttc
     2221 ttagatcgcc tggcagtaat atttagacac accaatccta ttgtagaaaa tggacagact
     2281 catccatgcc aaaaagtcat ccaggaaata tggccagttt tgtctgagac tctgaataag
     2341 catcgagctg acaatcggat tgtagagcgt tgttgtagat gcctgcgctt tgcggttcgc
     2401 tgtgtaggca aaggatctgc agccctgtta cagccactag tcacacagat ggtgaatgtg
     2461 taccatgtac atcagcattc ctgtttcctg tatcttggca gtatacttgt ggatgagtac
     2521 ggcatggagg aaggctgtcg gcagggatta ttagacatgc tccaggcgct atgcattccc
     2581 acctttcagc tcctagaaca gcagaatggc ctccagaatc accccgacac tgtagatgac
     2641 ctgttcaggt tagccacccg cccaagatcc caacccaaag agtggtgcca cccacagtgt
     2701 gtgggtcttc ccacttcagt taacctaatc aagataatcc cccacaggaa tgcccagaat
     2761 cctgtctccc aggtgattat agatctcatt gagttgaaat tgagattaac catttcactg
     2821 cccacctcac acctttttat aaataagagt tcacagcaca attcagtgaa aagtgtggtt
     2881 tatctctttg ttttgttgtc ctggtatgta caaccctgta cacacacaca cacacacaca
     2941 cacacacaca cacacacgca cacacacacg cacacacaca ctctctctct ctctctctct
     3001 ctctctcttt ctctctctcc tccagagtgg cccatttatt aaaattcatt ctctaac
//
