LOCUS       XM_006236186            4051 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transportin 3 (Tnpo3), transcript
            variant X2, mRNA.
ACCESSION   XM_006236186
VERSION     XM_006236186.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006236186.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006236186.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4051
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4051
                     /gene="Tnpo3"
                     /note="transportin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 47 ESTs, 1 long
                     SRA read, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 139
                     samples with support for all annotated introns"
                     /db_xref="GeneID:296954"
                     /db_xref="RGD:1308938"
     CDS             376..2949
                     /gene="Tnpo3"
                     /codon_start=1
                     /product="transportin-3 isoform X2"
                     /protein_id="XP_006236248.1"
                     /db_xref="GeneID:296954"
                     /db_xref="RGD:1308938"
                     /translation="MKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLAL
                     AIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTE
                     IIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLA
                     LLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAV
                     AREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEIS
                     FNFWYRLGEHLYKTNDEVIHSIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFR
                     MRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPT
                     LVEVLEGVVHLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLA
                     SAAAKAIHNICSVCRDHMAQHFNGLLEIAHSLDSFMLSPEAAVGLLKGTALVLARLPL
                     DKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTNPIVENGQTH
                     PCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVN
                     VYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDT
                     VDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANSSVMRFLRDLIHTG
                     VANDHEEDFEVRKELIGQVMDQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVD
                     RPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLF
                     R"
ORIGIN      
        1 cgccgccgct tccaccacca tggaaggagc caagccaacc ttgcagctcg tgtaccaggc
       61 ggtgcaggcg ctttaccacg acccagatcc cagcggaaag gagcgcgcct cgttttggct
      121 tggggagctg caacgttcgt ctctttgaaa tgtgctgcta gtgggagctg cagcttcctc
      181 ctgctgactt gagccccagg cttcagttga gatggccctt tgagaatgtg gagcttagtc
      241 caagcctgga tttcagtggg tagcacctgg catctgtggc tagaaagtcc ttgaagtgtt
      301 catgcgtggg agatttctga tcaattgtta cagatccgac aggatgtgga atcatgctat
      361 ttcgctgccc agaccatgaa aatgaagatt cagacctcat tttatgagct tcccacagac
      421 tcccatgctt ctttaaggga ctcattgcta actcatattc agaacttgaa agacttgtca
      481 cctgtcattg taacacagct ggctttagca atagcagacc ttgccctaca gatgccttct
      541 tggaagggat gcgtacaaac attggtagaa aaatatagca atgatgtaac ttctttgcct
      601 tttttgctgg aaatccttac agtgttacct gaagaagtac acagtcgttc cttgcggatt
      661 ggagccaaca ggcgcacaga aattatagaa gacttagcct tctactctag tacagtggtt
      721 tctttattga tgacatgtgt agagaaagca ggaactgacg agaagatgct tatgaaggtc
      781 ttccgatgtt tgggaagttg gtttaacttg ggagttttgg acagtaactt catggctaat
      841 aataagttat tagcactcct ttttgaggtt ttgcaacaag ataagacctc atctaaccta
      901 cacgaagctg cttctgactg tgtgtgctcc gctctctatg ctattgaaaa tgtagagact
      961 aacttgccat tggccatgca gctttttcag ggcgtcctga cactggagac tgcctatcat
     1021 atggctgtgg cacgggaaga tttagacaaa gttctgaatt actgccgtat cttcaccgaa
     1081 ctatgtgaaa cttttctgga aaaaattgtc tgtactccag gccaaggtct gggagatctt
     1141 cgaactttgg aattgcttct tatctgcgca ggccaccctc agtatgaggt agtagaaatt
     1201 tcctttaact tttggtaccg gctaggagaa catttataca aaaccaatga tgaagttatt
     1261 cacagcatct tcaaagcata tattcagagg ctgcttcatg ccttggctcg acactgccag
     1321 ttggaaccag accatgaagg agttcctgaa gagactgatg actttgggga gtttcgaatg
     1381 agagtgtcag acctggtgaa ggacttgatt ttcttgattg gatctatgga gtgctttgct
     1441 cagttgtact ctactctgaa ggaaggcaat ccaccctggg aggtgacaga agcggtcctc
     1501 tttatcatgg ctgctatagc aaagagtgtt gatccggaga acaatcctac actcgtggag
     1561 gtactggagg gagttgtcca tctcccagag actgtgcaca cagctgtgcg ctacaccagc
     1621 attgagttgg ttggtgaaat gagtgaagtg gtggaccgaa atcctcagtt tctggatcct
     1681 gtattgggct atttgatgaa aggcctgtgt gaaaagcctc tggcttctgc tgcagccaaa
     1741 gccattcata acatttgttc cgtttgtcgg gatcatatgg ctcagcactt taatggactc
     1801 ctagaaattg cccactccct tgattctttc atgttgtctc ctgaagccgc tgtgggtttg
     1861 ctaaaaggaa cagctcttgt cctagcaaga ctacctttgg ataagatcac tgaatgtctt
     1921 agtgagttat gttctgttca ggttatggca ttgaaaaagc tgttgtctca ggagcccagc
     1981 aatggcattt cttcagatcc cactgtcttc ttagatcgcc tggcagtaat atttagacac
     2041 accaatccta ttgtagaaaa tggacagact catccatgcc aaaaagtcat ccaggaaata
     2101 tggccagttt tgtctgagac tctgaataag catcgagctg acaatcggat tgtagagcgt
     2161 tgttgtagat gcctgcgctt tgcggttcgc tgtgtaggca aaggatctgc agccctgtta
     2221 cagccactag tcacacagat ggtgaatgtg taccatgtac atcagcattc ctgtttcctg
     2281 tatcttggca gtatacttgt ggatgagtac ggcatggagg aaggctgtcg gcagggatta
     2341 ttagacatgc tccaggcgct atgcattccc acctttcagc tcctagaaca gcagaatggc
     2401 ctccagaatc accccgacac tgtagatgac ctgttcaggt tagccacccg atttattcag
     2461 cgaagccctg tcaccttgct gaggagccag gtggttatcc cgatcttaca gtgggccatc
     2521 gcgtctacca ccttggatca ccgagatgcc aattccagtg tcatgaggtt cctgcgagac
     2581 ctcatccaca caggagtagc aaatgatcat gaagaagact ttgaagtgcg gaaggaacta
     2641 attggacagg tgatggacca gcttgggcag cagcttgtaa gccagttgct acacacgtgc
     2701 tgcttctgcc ttccccctta caccctaccc gatgtggctg aagtgctctg ggagatcatg
     2761 caggttgaca gaccgacttt ctgtcggtgg ctagagaatt ccttgaaagg tttgccaaag
     2821 gagacaacgg tgggagctgt cacagtgaca cataaacaac ttacagattt ccacaagcaa
     2881 gtcactagtg ctgaggaatg taagcaagtt tgctgggcct tgcgagactt caccaggttg
     2941 tttcgatagc tcaagctcac actcctgcac tgtgcctgtc atcaggaatg tcttttttca
     3001 ttagaagaca ggaagaaaac aacccagact gtgtcccaca atcagaaacc tccgttgtgg
     3061 cagaggggcc ttcacgacca ccataccatc ccgccacaca gggagagact tcaccctcca
     3121 aggcatccta aggagtccct gtttggggtg tgagggggaa acagcgcgcg gtatttaagg
     3181 atggctacag cctgtccggc gtggtgggag ggaactagtt tcctggtgaa cttctttcta
     3241 aaaggaaaaa taatttaagg aaagttaaaa aaaaaaaaaa aaagaaagaa agaaaagaaa
     3301 agaaaatttt ttaaaaagga aagctgagat gaaaccagaa ctgaaattcg cactggcagc
     3361 agaagatgca cacacatgac agacacacac atgacagaca cacaccagca tgcagtgcac
     3421 acggagacat ggcagtgaga gctgtctgag acagaccctt accttaggga aacgagggaa
     3481 tagcgtctgc tctccttcct ttaaacacag gtgaacagag gaaacgctct ccccaattcc
     3541 tccaccttta gagccgccca gacaaggagc ctgttgtgct tatatcatgg ttagggatgg
     3601 tagtcagaac cagccaaggt gacccaaccc tgatcctatc gagttgctaa gtccactcca
     3661 gtccacacgt cttcgtcatc agctttgggg agaaaagcca aacctgggga gggcggagag
     3721 gacaaatgtg tagtaaacct ttccctctct ctctctcttt tcttctctct ctctctctct
     3781 ctctctctct ctctctctct tctctccctc ttgattattc atccacaaat atggggtggg
     3841 aggggattaa aaagagggca agagtatgaa gggaatgtat ttacagggct acctgtattt
     3901 tgctaaaaaa gtgtgaaaat taattgcctt caagggcact gttctgtcct gtgtgtggcc
     3961 atcttatgaa taaatcaaca gcaccaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     4021 aggaaaaaaa aataaaaacc aatttttcaa a
//
