LOCUS       XM_039102145            4637 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transportin 1 (Tnpo1), transcript
            variant X6, mRNA.
ACCESSION   XM_039102145
VERSION     XM_039102145.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102145.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4637
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4637
                     /gene="Tnpo1"
                     /note="transportin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 23 ESTs, 4 long
                     SRA reads, 13 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 48 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:309126"
                     /db_xref="RGD:1308372"
     CDS             34..2706
                     /gene="Tnpo1"
                     /codon_start=1
                     /product="transportin-1 isoform X2"
                     /protein_id="XP_038958073.1"
                     /db_xref="GeneID:309126"
                     /db_xref="RGD:1308372"
                     /translation="MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYP
                     DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDS
                     SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA
                     EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIE
                     NLFALAGDEEAEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA
                     CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDEAIPDSEQD
                     IRPRFHRSRTVAQQHEEDGIEEDDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRD
                     ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK
                     KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE
                     EEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM
                     PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAM
                     LNNAQPEQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE
                     VRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG
                     IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC
                     TSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKI
                     LHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV"
ORIGIN      
        1 ctaaaacagt gatggcttca atgacaaacc aagatggagt atgagtggaa acctgacgag
       61 caagggcttc agcagattct gcagctgctc aaggagtccc agtccccaga caccaccatc
      121 cagaggaccg tgcaacaaaa actggaacaa cttaatcaat atccagattt taacaactac
      181 ttaatttttg ttcttacaaa attaaaatct gaagatgagc ccacacggtc attgagcggt
      241 ctgatcttga agaacaatgt gaaagctcat tttcagaact tcccgaacgg tgtgacggac
      301 ttcatcaaga gtgaatgtct aaataatatt ggggactcct ctccgctgat cagggccact
      361 gttggtattt taattacgac catagcctcc aagggagaac tgcagaattg gcctgacctc
      421 ttaccaaaac tctgtagcct gctggattct gaagactaca acacctgtga gggggcattc
      481 ggtgcccttc agaagatatg tgaggactcc gcggagattt tagacagcga tgtcttggat
      541 cgccctctca acatcatgat ccccaagttc ttacagtttt tcaagcacag tagtcccaaa
      601 ataaggtctc acgctgttgc atgtgtcaat cagttcatca tcagtcggac ccaagcgctc
      661 atgttgcaca tcgactcctt cattgagaac ctctttgcac tggctggtga cgaggaagcc
      721 gaggtgcgga agaacgtgtg ccgagcgctt gtgatgctgc tggaagtccg gatggaccgt
      781 ctgctgccgc acatgcataa catagtcgag tacatgcttc agaggaccca agaccaagat
      841 gagaatgtgg ctctggaggc ctgtgaattc tggctgactt tggctgaaca gccaatatgc
      901 aaagatgtac ttgtaaggca tctgcctaag ttgattcccg tgttagtgaa tggcatgaag
      961 tactcagata tagacatcat cctgctgaag ggggatgttg aagaagacga ggccatccct
     1021 gatagtgagc aggatatacg gccacggttc catcgctcaa ggacggtggc tcagcagcat
     1081 gaagaggatg ggattgaaga ggatgacgac gacgacgatg agattgatga tgacgatacc
     1141 atttctgact ggaatctcag aaagtgttct gctgctgctc tcgatgttct cgcaaacgtt
     1201 tatcgtgatg agcttttgcc acacattttg ccacttttga aagaattgct tttccatcac
     1261 gagtgggttg tgaaagagtc tggcatcttg gttttaggag caattgctga aggttgcatg
     1321 caaggcatga ttccgtacct gcccgagctc attcctcacc tcattcagtg cctttctgac
     1381 aaaaaggctc ttgtgcgttc catcacctgc tggactctaa gccgctatgc acactgggta
     1441 gtcagccagc caccagatac atacctgaag ccattaatga cggaattgct gaagcgtatc
     1501 ctggatagca acaagagagt acaagaagct gcttgcagtg cctttgctac gttagaagag
     1561 gaggcttgta cagagcttgt cccctacctt gcttatatac tcgacaccct cgtcttcgcc
     1621 ttcagtaaat accagcacaa gaacctgctc attctgtacg atgccatagg gacactagca
     1681 gattcagtgg gacatcattt aaacaagcca gaatatattc agatgctaat gcctcctctg
     1741 atccagaagt ggaacatgtt aaaagatgaa gacaaggatc ttttcccttt acttgagtgc
     1801 ctctcatctg ttgccacagc cttgcagtct ggtttccttc catattgtga acctgtgtat
     1861 cagcgttgtg taaacctggt acagaagaca ctagcacaag ccatgctaaa caatgctcag
     1921 ccagaacaat atgaagctcc agataaagac tttatgattg tggctcttga cttactcagt
     1981 ggcctggctg aaggactggg aggcaacatt gagcagctgg tggcccgaag taacatcctg
     2041 acactgatgt atcaatgcat gcaggataaa atgcccgaag ttcggcagag ttcttttgca
     2101 ttactaggtg atctgactaa agcttgcttt cagcacgtta agccttgtat agctgatttc
     2161 atgccaatat tgggaaccaa tctaaatcca gagtttattt cagtctgcaa caacgccacc
     2221 tgggcaattg gggaaatatc aattcaaatg ggcatagaga tgcagcctta catccctatg
     2281 gtgctgcacc agctcgtgga gatcattaac agacccaaca ccccaaagac gctgttggag
     2341 aacacagcaa taacaattgg tcgtcttggt tacgtttgtc ctcaagaggt ggcccccatg
     2401 ctacagcagt ttataagacc ctggtgtacc tctctgagaa acataagaga caatgaagaa
     2461 aaagattcag cattccgtgg gatttgtacc atgatcagtg tgaatcctag tggcgtaatc
     2521 caagatttta tatttttttg tgatgctgtt gcatcatgga ttaatcccaa agacgacctc
     2581 agagacatgt tctgtaagat ccttcatgga tttaaaaacc aagttgggga tgaaaattgg
     2641 aggcgattct ctgaccagtt tcctcttccc ttaaaagagc gtcttgcggc tttttatggt
     2701 gtttaatcta atacacttaa gctgcagtcc caaaactagg ggtccgtcag tcttggagac
     2761 tatatgggag cctctgcacc cagggaaaat gttacccttt acagggggga agggtaaacc
     2821 agtagggaat acagtacaat cccaacccta ctgggagggg cgggagggag gtgttgccgt
     2881 cactgtatta agtcgatgtt gggaaatgtt ttaacatctg gagcctttgt gggtggaaat
     2941 ctgtctccaa ttacaactct gcactggatg tgaagaagca aaaactattc cgtctactca
     3001 cagaacagta ctttctggaa tattatgggg aattgtacca aacaagaacc acgtaagcaa
     3061 tgcctaggga taaggaggag gaaaagcaca tggtccacaa caaagggcac ctaagagtgg
     3121 gaagctgcaa cagtaaggaa gctttttatt aaaggtttta tataaatttt cccacatcat
     3181 ggggccttgt tttgcatgct gatgaagagc tacttagaac taacgattaa aatcagctgc
     3241 ctcccctggt tagacgcagg ttcttgaaag ttacaattta aggtaccccc aaaaagttgg
     3301 aaataaaagg aaacaaattt gaacaacgaa gcaccctgtg acatgccgac gcgccactcc
     3361 ttttaccttt gcgggctggg cagggaggga ggaatcaatg gggtcggggt caaaggaaag
     3421 gtgacatcta attttacatt aaaacgttag tggatataag ttcatggttg tacttcttag
     3481 atttaatttc taggccgaca tgttatctaa ggtgcagttt aaggtccagg catgcgctcg
     3541 ggctcatagt gattgacgtg gtgtgcatta gtgaccgcag catgctcgcc tcatagagtg
     3601 cggttggtat ccattcaccg atgtcgcgcc agtttgggtt gccgtttacc agttcaatat
     3661 agccctgcat ttaaaattcc ttttgagatt cgtggatttt atttttatta agaatataga
     3721 tatataaagt actgtagttt acaactaggc cttgaaatat ctttttagga tctgttagga
     3781 ataagattga tattgtattg tgtgtaacct gcacaatgtg gaaagctgat atacctgtgc
     3841 aaaatctttg cctctgtgct gtcagtgtgg tgtgctttct gcatggttat atgcgactag
     3901 taattttatc aaatttcaaa ttacatggta aaagatctgt aaaaggctgc ataaatgtta
     3961 gttggcacat aaagacaatt gtagaagttg aaacatgatt gctatatttc aatgtttatt
     4021 cccactcaac atattgcctc taagctttcc tttaattttt ttttttattt ttatttgtgt
     4081 tcgaagcatg atcttaaaga tatgtttaag ttaatggatg taatgcaggg ttcctacact
     4141 gtattggcgc atgttggtgg ccctctgtgt cctaggcttg tgcacatagg gcacgtacaa
     4201 agctacagag tgagagttgg tttggatcct cttcatttca tttgtttggc ttttctgtta
     4261 tttttttccc tctacttaca tgtatttctg tgaataaatc cttgttaagt taacccttta
     4321 cttttccttc catgtgtatt ttcttatata ctgtgaatgt gaagacccta actggtacac
     4381 ttgatcttat gtccatatga aagtgcaaat ctttattaat ttggattgcc tgagcagtgt
     4441 gtatcccatg atgatgaagg aaaatggaga gatttttcct tttagctctg ctggtcagag
     4501 atgaagccac acctttccat ttttcaatgc tgcatattta atctgcaaaa aaagttaagc
     4561 cataacagcc tttttctatt ttactttgtc acctttgcat tgcagaataa ataccgaata
     4621 accgtttttt ataagca
//
