LOCUS       XM_039102144            4861 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transportin 1 (Tnpo1), transcript
            variant X3, mRNA.
ACCESSION   XM_039102144
VERSION     XM_039102144.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102144.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4861
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4861
                     /gene="Tnpo1"
                     /note="transportin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 23 ESTs, 4 long
                     SRA reads, 13 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 76 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:309126"
                     /db_xref="RGD:1308372"
     CDS             258..2930
                     /gene="Tnpo1"
                     /codon_start=1
                     /product="transportin-1 isoform X2"
                     /protein_id="XP_038958072.1"
                     /db_xref="GeneID:309126"
                     /db_xref="RGD:1308372"
                     /translation="MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYP
                     DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDS
                     SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA
                     EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIE
                     NLFALAGDEEAEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA
                     CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDEAIPDSEQD
                     IRPRFHRSRTVAQQHEEDGIEEDDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRD
                     ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK
                     KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE
                     EEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM
                     PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAM
                     LNNAQPEQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE
                     VRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG
                     IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC
                     TSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKI
                     LHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV"
ORIGIN      
        1 gtcctcactg tgtagtcctg tcccgcctgt cctgtaactc actgtgtaga ctagtctggc
       61 ctggagccca tagacatctt cctgtatttg cttcctgagt gtgggatgaa aaccatgagc
      121 caccatgccc agctcagcag taatcttcct gctcagtgcg actgtgagga gtgagcccag
      181 gaaaacgctg ccctaaccct gcgcctctac aggagccatg gtcttaagga gaaccaagtg
      241 acagacagca aaccaagatg gagtatgagt ggaaacctga cgagcaaggg cttcagcaga
      301 ttctgcagct gctcaaggag tcccagtccc cagacaccac catccagagg accgtgcaac
      361 aaaaactgga acaacttaat caatatccag attttaacaa ctacttaatt tttgttctta
      421 caaaattaaa atctgaagat gagcccacac ggtcattgag cggtctgatc ttgaagaaca
      481 atgtgaaagc tcattttcag aacttcccga acggtgtgac ggacttcatc aagagtgaat
      541 gtctaaataa tattggggac tcctctccgc tgatcagggc cactgttggt attttaatta
      601 cgaccatagc ctccaaggga gaactgcaga attggcctga cctcttacca aaactctgta
      661 gcctgctgga ttctgaagac tacaacacct gtgagggggc attcggtgcc cttcagaaga
      721 tatgtgagga ctccgcggag attttagaca gcgatgtctt ggatcgccct ctcaacatca
      781 tgatccccaa gttcttacag tttttcaagc acagtagtcc caaaataagg tctcacgctg
      841 ttgcatgtgt caatcagttc atcatcagtc ggacccaagc gctcatgttg cacatcgact
      901 ccttcattga gaacctcttt gcactggctg gtgacgagga agccgaggtg cggaagaacg
      961 tgtgccgagc gcttgtgatg ctgctggaag tccggatgga ccgtctgctg ccgcacatgc
     1021 ataacatagt cgagtacatg cttcagagga cccaagacca agatgagaat gtggctctgg
     1081 aggcctgtga attctggctg actttggctg aacagccaat atgcaaagat gtacttgtaa
     1141 ggcatctgcc taagttgatt cccgtgttag tgaatggcat gaagtactca gatatagaca
     1201 tcatcctgct gaagggggat gttgaagaag acgaggccat ccctgatagt gagcaggata
     1261 tacggccacg gttccatcgc tcaaggacgg tggctcagca gcatgaagag gatgggattg
     1321 aagaggatga cgacgacgac gatgagattg atgatgacga taccatttct gactggaatc
     1381 tcagaaagtg ttctgctgct gctctcgatg ttctcgcaaa cgtttatcgt gatgagcttt
     1441 tgccacacat tttgccactt ttgaaagaat tgcttttcca tcacgagtgg gttgtgaaag
     1501 agtctggcat cttggtttta ggagcaattg ctgaaggttg catgcaaggc atgattccgt
     1561 acctgcccga gctcattcct cacctcattc agtgcctttc tgacaaaaag gctcttgtgc
     1621 gttccatcac ctgctggact ctaagccgct atgcacactg ggtagtcagc cagccaccag
     1681 atacatacct gaagccatta atgacggaat tgctgaagcg tatcctggat agcaacaaga
     1741 gagtacaaga agctgcttgc agtgcctttg ctacgttaga agaggaggct tgtacagagc
     1801 ttgtccccta ccttgcttat atactcgaca ccctcgtctt cgccttcagt aaataccagc
     1861 acaagaacct gctcattctg tacgatgcca tagggacact agcagattca gtgggacatc
     1921 atttaaacaa gccagaatat attcagatgc taatgcctcc tctgatccag aagtggaaca
     1981 tgttaaaaga tgaagacaag gatcttttcc ctttacttga gtgcctctca tctgttgcca
     2041 cagccttgca gtctggtttc cttccatatt gtgaacctgt gtatcagcgt tgtgtaaacc
     2101 tggtacagaa gacactagca caagccatgc taaacaatgc tcagccagaa caatatgaag
     2161 ctccagataa agactttatg attgtggctc ttgacttact cagtggcctg gctgaaggac
     2221 tgggaggcaa cattgagcag ctggtggccc gaagtaacat cctgacactg atgtatcaat
     2281 gcatgcagga taaaatgccc gaagttcggc agagttcttt tgcattacta ggtgatctga
     2341 ctaaagcttg ctttcagcac gttaagcctt gtatagctga tttcatgcca atattgggaa
     2401 ccaatctaaa tccagagttt atttcagtct gcaacaacgc cacctgggca attggggaaa
     2461 tatcaattca aatgggcata gagatgcagc cttacatccc tatggtgctg caccagctcg
     2521 tggagatcat taacagaccc aacaccccaa agacgctgtt ggagaacaca gcaataacaa
     2581 ttggtcgtct tggttacgtt tgtcctcaag aggtggcccc catgctacag cagtttataa
     2641 gaccctggtg tacctctctg agaaacataa gagacaatga agaaaaagat tcagcattcc
     2701 gtgggatttg taccatgatc agtgtgaatc ctagtggcgt aatccaagat tttatatttt
     2761 tttgtgatgc tgttgcatca tggattaatc ccaaagacga cctcagagac atgttctgta
     2821 agatccttca tggatttaaa aaccaagttg gggatgaaaa ttggaggcga ttctctgacc
     2881 agtttcctct tcccttaaaa gagcgtcttg cggcttttta tggtgtttaa tctaatacac
     2941 ttaagctgca gtcccaaaac taggggtccg tcagtcttgg agactatatg ggagcctctg
     3001 cacccaggga aaatgttacc ctttacaggg gggaagggta aaccagtagg gaatacagta
     3061 caatcccaac cctactggga ggggcgggag ggaggtgttg ccgtcactgt attaagtcga
     3121 tgttgggaaa tgttttaaca tctggagcct ttgtgggtgg aaatctgtct ccaattacaa
     3181 ctctgcactg gatgtgaaga agcaaaaact attccgtcta ctcacagaac agtactttct
     3241 ggaatattat ggggaattgt accaaacaag aaccacgtaa gcaatgccta gggataagga
     3301 ggaggaaaag cacatggtcc acaacaaagg gcacctaaga gtgggaagct gcaacagtaa
     3361 ggaagctttt tattaaaggt tttatataaa ttttcccaca tcatggggcc ttgttttgca
     3421 tgctgatgaa gagctactta gaactaacga ttaaaatcag ctgcctcccc tggttagacg
     3481 caggttcttg aaagttacaa tttaaggtac ccccaaaaag ttggaaataa aaggaaacaa
     3541 atttgaacaa cgaagcaccc tgtgacatgc cgacgcgcca ctccttttac ctttgcgggc
     3601 tgggcaggga gggaggaatc aatggggtcg gggtcaaagg aaaggtgaca tctaatttta
     3661 cattaaaacg ttagtggata taagttcatg gttgtacttc ttagatttaa tttctaggcc
     3721 gacatgttat ctaaggtgca gtttaaggtc caggcatgcg ctcgggctca tagtgattga
     3781 cgtggtgtgc attagtgacc gcagcatgct cgcctcatag agtgcggttg gtatccattc
     3841 accgatgtcg cgccagtttg ggttgccgtt taccagttca atatagccct gcatttaaaa
     3901 ttccttttga gattcgtgga ttttattttt attaagaata tagatatata aagtactgta
     3961 gtttacaact aggccttgaa atatcttttt aggatctgtt aggaataaga ttgatattgt
     4021 attgtgtgta acctgcacaa tgtggaaagc tgatatacct gtgcaaaatc tttgcctctg
     4081 tgctgtcagt gtggtgtgct ttctgcatgg ttatatgcga ctagtaattt tatcaaattt
     4141 caaattacat ggtaaaagat ctgtaaaagg ctgcataaat gttagttggc acataaagac
     4201 aattgtagaa gttgaaacat gattgctata tttcaatgtt tattcccact caacatattg
     4261 cctctaagct ttcctttaat tttttttttt atttttattt gtgttcgaag catgatctta
     4321 aagatatgtt taagttaatg gatgtaatgc agggttccta cactgtattg gcgcatgttg
     4381 gtggccctct gtgtcctagg cttgtgcaca tagggcacgt acaaagctac agagtgagag
     4441 ttggtttgga tcctcttcat ttcatttgtt tggcttttct gttatttttt tccctctact
     4501 tacatgtatt tctgtgaata aatccttgtt aagttaaccc tttacttttc cttccatgtg
     4561 tattttctta tatactgtga atgtgaagac cctaactggt acacttgatc ttatgtccat
     4621 atgaaagtgc aaatctttat taatttggat tgcctgagca gtgtgtatcc catgatgatg
     4681 aaggaaaatg gagagatttt tccttttagc tctgctggtc agagatgaag ccacaccttt
     4741 ccatttttca atgctgcata tttaatctgc aaaaaaagtt aagccataac agcctttttc
     4801 tattttactt tgtcaccttt gcattgcaga ataaataccg aataaccgtt ttttataagc
     4861 a
//
