LOCUS       XM_039090361            1192 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus troponin T2, cardiac type (Tnnt2),
            transcript variant X18, mRNA.
ACCESSION   XM_039090361
VERSION     XM_039090361.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1192
                     /gene="Tnnt2"
                     /gene_synonym="Ctt; CTTG; RATCTTG; Tnnt3"
                     /note="troponin T2, cardiac type; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 56
                     ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 10 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:24837"
                     /db_xref="RGD:3882"
     CDS             125..994
                     /gene="Tnnt2"
                     /gene_synonym="Ctt; CTTG; RATCTTG; Tnnt3"
                     /codon_start=1
                     /product="troponin T, cardiac muscle isoform X14"
                     /protein_id="XP_038946289.1"
                     /db_xref="GeneID:24837"
                     /db_xref="RGD:3882"
                     /translation="MSDAEEEVVEYEEEQEEQEEAVEEEDGEAEPDPEGEAEAEEDKA
                     EEVGPDEEARDAEDGPVEDSKPKPRLFMPNLVPPKIPDGERVDFDDIHRKRMEKDLNE
                     LQTLIEAHFENRKKEEEELISLKDRIEKRRAERAEQQRIRNEREKERQNRLAEERARR
                     EEEENRRKAEDEARKKKALSNMMHFGGYIQKQAQTERKSGKRQTEREKKKKILAERRK
                     VLAIDHLNEDQLREKAKELWQSIHNLEAEKFDLQEKFKQQKYEINVLRNRINDNQKVS
                     KTRGKAKVTGRWK"
ORIGIN      
        1 acaaggcccc agcccacatg cttgcttaaa gctctcccca tgccctgccc tcagccagtc
       61 cctgctgagg ctgagcagac acctcaagtc ctgagtgcag gtccctgttc agagaacgga
      121 gaacatgtct gacgccgagg aagaggtggt ggagtacgag gaggaacagg aagagcaaga
      181 ggaggcagtg gaggaggagg atggtgaggc cgagcctgat cccgagggtg aggcagaggc
      241 agaggaggac aaggcagaag aggttggtcc tgatgaagaa gccagagatg ctgaagatgg
      301 tccagtagag gactccaaac ccaagcccag gctcttcatg cccaacttgg tgccacccaa
      361 gatccctgac ggagagagag tggactttga tgacatccac aggaagcgca tggagaagga
      421 cctgaacgag ctgcagactc tgatcgaggc tcacttcgag aacaggaaga aggaggaaga
      481 ggagctcatt tctctcaaag acaggatcga aaagcgtcgg gcagagcggg ctgaacagca
      541 gcgtattcgc aatgaacgag agaaggaaag gcagaaccgc ctggctgaag agagggcccg
      601 gcgtgaggag gaggagaaca ggaggaaggc tgaagatgag gcccggaaga agaaggctct
      661 gtccaacatg atgcattttg gagggtacat ccagaagcag gctcagacag agcggaagag
      721 tgggaagaga cagacagagc gagagaagaa gaagaagatt ctggcagaga ggaggaaggt
      781 gctggccatc gaccacctga atgaagacca gctgagagag aaggccaagg agctatggca
      841 gagtatccac aacctggagg ccgagaagtt cgacctgcag gaaaagttca agcagcagaa
      901 atacgaaatc aacgttctgc gaaacaggat caacgacaac cagaaagtct ccaaaactcg
      961 tgggaaggcc aaagtcaccg ggcgttggaa atagatggaa ctgtgttcga caaagctctg
     1021 ctccttgcct gtgcccttgc cctgtgaatc ccagctctag gtcttgccag gcacccgatg
     1081 cagactcctg tctggaaagt aggagctgac ctagctagaa gccagtactc tgcctgaccc
     1141 ctatgcccac accacgtcag gaataaaaag ccagcacatt gtgcacatgg aa
//
