LOCUS       XM_039090359            1116 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus troponin T2, cardiac type (Tnnt2),
            transcript variant X11, mRNA.
ACCESSION   XM_039090359
VERSION     XM_039090359.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1116
                     /gene="Tnnt2"
                     /gene_synonym="Ctt; CTTG; RATCTTG; Tnnt3"
                     /note="troponin T2, cardiac type; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 56
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 10 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:24837"
                     /db_xref="RGD:3882"
     CDS             16..918
                     /gene="Tnnt2"
                     /gene_synonym="Ctt; CTTG; RATCTTG; Tnnt3"
                     /codon_start=1
                     /product="troponin T, cardiac muscle isoform X9"
                     /protein_id="XP_038946287.1"
                     /db_xref="GeneID:24837"
                     /db_xref="RGD:3882"
                     /translation="MSDAEEEVVEYEEEQEEEDWSEEEEDEQEEAVEEEDGEAEPDPE
                     GEAEAEEDKAEEVGPDEEARDAEDGPVEDSKPKPSRLFMPNLVPPKIPDGERVDFDDI
                     HRKRMEKDLNELQTLIEAHFENRKKEEEELISLKDRIEKRRAERAEQQRIRNEREKER
                     QNRLAEERARREEEENRRKAEDEARKKKALSNMMHFGGYIQKQAQTERKSGKRQTERE
                     KKKKILAERRKVLAIDHLNEDQLREKAKELWQSIHNLEAEKFDLQEKFKQQKYEINVL
                     RNRINDNQKVSKTRGKAKVTGRWK"
ORIGIN      
        1 gggagaacgg agaacatgtc tgacgccgag gaagaggtgg tggagtacga ggaggaacag
       61 gaagaggaag actggagcga agaagaggaa gacgagcaag aggaggcagt ggaggaggag
      121 gatggtgagg ccgagcctga tcccgagggt gaggcagagg cagaggagga caaggcagaa
      181 gaggttggtc ctgatgaaga agccagagat gctgaagatg gtccagtaga ggactccaaa
      241 cccaagccca gcaggctctt catgcccaac ttggtgccac ccaagatccc tgacggagag
      301 agagtggact ttgatgacat ccacaggaag cgcatggaga aggacctgaa cgagctgcag
      361 actctgatcg aggctcactt cgagaacagg aagaaggagg aagaggagct catttctctc
      421 aaagacagga tcgaaaagcg tcgggcagag cgggctgaac agcagcgtat tcgcaatgaa
      481 cgagagaagg aaaggcagaa ccgcctggct gaagagaggg cccggcgtga ggaggaggag
      541 aacaggagga aggctgaaga tgaggcccgg aagaagaagg ctctgtccaa catgatgcat
      601 tttggagggt acatccagaa gcaggctcag acagagcgga agagtgggaa gagacagaca
      661 gagcgagaga agaagaagaa gattctggca gagaggagga aggtgctggc catcgaccac
      721 ctgaatgaag accagctgag agagaaggcc aaggagctat ggcagagtat ccacaacctg
      781 gaggccgaga agttcgacct gcaggaaaag ttcaagcagc agaaatacga aatcaacgtt
      841 ctgcgaaaca ggatcaacga caaccagaaa gtctccaaaa ctcgtgggaa ggccaaagtc
      901 accgggcgtt ggaaatagat ggaactgtgt tcgacaaagc tctgctcctt gcctgtgccc
      961 ttgccctgtg aatcccagct ctaggtcttg ccaggcaccc gatgcagact cctgtctgga
     1021 aagtaggagc tgacctagct agaagccagt actctgcctg acccctatgc ccacaccacg
     1081 tcaggaataa aaagccagca cattgtgcac atggaa
//
