LOCUS       XM_006249829            1225 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus troponin T2, cardiac type (Tnnt2),
            transcript variant X10, mRNA.
ACCESSION   XM_006249829
VERSION     XM_006249829.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006249829.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1225
                     /gene="Tnnt2"
                     /gene_synonym="Ctt; CTTG; RATCTTG; Tnnt3"
                     /note="troponin T2, cardiac type; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 56
                     ESTs, 1 long SRA read, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 10 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:24837"
                     /db_xref="RGD:3882"
     CDS             125..1027
                     /gene="Tnnt2"
                     /gene_synonym="Ctt; CTTG; RATCTTG; Tnnt3"
                     /codon_start=1
                     /product="troponin T, cardiac muscle isoform X9"
                     /protein_id="XP_006249891.1"
                     /db_xref="GeneID:24837"
                     /db_xref="RGD:3882"
                     /translation="MSDAEEEVVEYEEEQEEEDWSEEEEDEQEEAVEEEDGEAEPDPE
                     GEAEAEEDKAEEVGPDEEARDAEDGPVEDSKPKPSRLFMPNLVPPKIPDGERVDFDDI
                     HRKRMEKDLNELQTLIEAHFENRKKEEEELISLKDRIEKRRAERAEQQRIRNEREKER
                     QNRLAEERARREEEENRRKAEDEARKKKALSNMMHFGGYIQKQAQTERKSGKRQTERE
                     KKKKILAERRKVLAIDHLNEDQLREKAKELWQSIHNLEAEKFDLQEKFKQQKYEINVL
                     RNRINDNQKVSKTRGKAKVTGRWK"
ORIGIN      
        1 acaaggcccc agcccacatg cttgcttaaa gctctcccca tgccctgccc tcagccagtc
       61 cctgctgagg ctgagcagac acctcaagtc ctgagtgcag gtccctgttc agagaacgga
      121 gaacatgtct gacgccgagg aagaggtggt ggagtacgag gaggaacagg aagaggaaga
      181 ctggagcgaa gaagaggaag acgagcaaga ggaggcagtg gaggaggagg atggtgaggc
      241 cgagcctgat cccgagggtg aggcagaggc agaggaggac aaggcagaag aggttggtcc
      301 tgatgaagaa gccagagatg ctgaagatgg tccagtagag gactccaaac ccaagcccag
      361 caggctcttc atgcccaact tggtgccacc caagatccct gacggagaga gagtggactt
      421 tgatgacatc cacaggaagc gcatggagaa ggacctgaac gagctgcaga ctctgatcga
      481 ggctcacttc gagaacagga agaaggagga agaggagctc atttctctca aagacaggat
      541 cgaaaagcgt cgggcagagc gggctgaaca gcagcgtatt cgcaatgaac gagagaagga
      601 aaggcagaac cgcctggctg aagagagggc ccggcgtgag gaggaggaga acaggaggaa
      661 ggctgaagat gaggcccgga agaagaaggc tctgtccaac atgatgcatt ttggagggta
      721 catccagaag caggctcaga cagagcggaa gagtgggaag agacagacag agcgagagaa
      781 gaagaagaag attctggcag agaggaggaa ggtgctggcc atcgaccacc tgaatgaaga
      841 ccagctgaga gagaaggcca aggagctatg gcagagtatc cacaacctgg aggccgagaa
      901 gttcgacctg caggaaaagt tcaagcagca gaaatacgaa atcaacgttc tgcgaaacag
      961 gatcaacgac aaccagaaag tctccaaaac tcgtgggaag gccaaagtca ccgggcgttg
     1021 gaaatagatg gaactgtgtt cgacaaagct ctgctccttg cctgtgccct tgccctgtga
     1081 atcccagctc taggtcttgc caggcacccg atgcagactc ctgtctggaa agtaggagct
     1141 gacctagcta gaagccagta ctctgcctga cccctatgcc cacaccacgt caggaataaa
     1201 aagccagcac attgtgcaca tggaa
//
