LOCUS       XM_006249866            1013 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus troponin I1, slow skeletal type
            (Tnni1), transcript variant X3, mRNA.
ACCESSION   XM_006249866
VERSION     XM_006249866.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006249866.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1013
                     /gene="Tnni1"
                     /note="troponin I1, slow skeletal type; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 48 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:29388"
                     /db_xref="RGD:621765"
     CDS             93..656
                     /gene="Tnni1"
                     /codon_start=1
                     /product="troponin I, slow skeletal muscle isoform X2"
                     /protein_id="XP_006249928.1"
                     /db_xref="GeneID:29388"
                     /db_xref="RGD:621765"
                     /translation="MPEVERKSKITASRKLMLKSLMLAKAKECWEQEHEEREAEKVRY
                     LSERIPTLQTRGLSLSALQDLCRELHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVL
                     DLRGKFKRPPLRRVRVSADAMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPVEVGD
                     WRKNVEAMSGMEGRKKMFDAAKSPTSQ"
ORIGIN      
        1 tggacctggg cagctgagta gagaggtgct ttgagctctc ttcacccgtc tcatctgcac
       61 aggacaccaa caggtgctgc cttgttacca ccatgccgga agttgagagg aaatctaaga
      121 tcactgcctc ccgtaaactc atgctgaaga gcctgatgct agccaaggcc aaggagtgct
      181 gggagcagga gcacgaggag cgagaggctg agaaggtgcg ttacctctcg gagcgcatcc
      241 ctacgctgca gacccgcggt ctttccctca gcgcccttca ggacttatgc cgagagctcc
      301 atgccaaggt ggaggtggtg gatgaggagc gctatgatat cgaagccaaa tgcctccaca
      361 acacgagaga gatcaaggac ctgaagctga aggtgctgga cctccgtggg aagttcaagc
      421 gtccacccct gcgccgggtc cgtgtctcag ccgacgccat gctccgagcc ctactgggtt
      481 ccaaacacaa ggtgtccatg gatctgcggg ccaacctcaa gtctgtgaag aaagaagaca
      541 cagaaaagga gcggccagtg gaggtgggag actggaggaa gaacgtggag gccatgtctg
      601 gcatggaagg ccgcaagaag atgttcgatg ctgccaagtc cccaacctcg cagtagaggt
      661 cggcttgctg aatggcactc tgggtcacgc tttggtcccc ttccagcccc actcacctat
      721 ccttctgccc atgcctggag cccttcctcc ctccagctct actatgccca cctttgaagc
      781 caggatgagt gcacacagag gggaagagag acgctggtgc ctgagacctc attccggcag
      841 tgtgggctta cagtacccac cgggcatgct ggggttatcc agacacccca aggggcccta
      901 ggctgaggag ggaggcagag agaatgcctt cgcagcagcc ccatattgct tccctccact
      961 tctgttgcta tctgcagtgt tcccaagttc tccattaaaa aaatccaggg tat
//
