LOCUS       XM_039085983            2135 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tyrosine kinase, non-receptor, 1
            (Tnk1), transcript variant X6, mRNA.
ACCESSION   XM_039085983
VERSION     XM_039085983.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039085983.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2135
                     /gene="Tnk1"
                     /note="tyrosine kinase, non-receptor, 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 4 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     14 samples with support for all annotated introns"
                     /db_xref="GeneID:303247"
                     /db_xref="RGD:1310113"
     CDS             104..2107
                     /gene="Tnk1"
                     /codon_start=1
                     /product="non-receptor tyrosine-protein kinase TNK1
                     isoform X3"
                     /protein_id="XP_038941911.1"
                     /db_xref="GeneID:303247"
                     /db_xref="RGD:1310113"
                     /translation="MLPEASSLWLLRLLRDVQLAQFYRPILEELNVTRPEHFDFVRPE
                     DLDNLGMGRPAQRRLTEALKRYRSGVKSKNWVYKILGGFAPEQKEIPPYSDSLPHLHE
                     PEGGLKCLIPEGAVCRGELLGSGCFGVVHQGLWTLPGGQSIPVAVKSLRVGPEGPMGT
                     ELGDFLREVSVMMKLEHPHVLRLHGLVLGQPLQMVMELAPLGSLHARLTAPAPMPPLP
                     VTLLCLFLRQLAGAMAYLGSCGLVHRDLATRNLLLASPRKIKVADFGLVRPLGGARGR
                     YVMGGPRPIPYAWCAPESLRQGAFSAASDVWMFGVTLWEMFSGGEEPWAGVPPYLILQ
                     RLEKDRARLPKPALCSRALYSLALRCWAPHPADRPTFSNLEGLLQEAWLSEGRCVREV
                     TEPGALRMEPGDPITIIEGSPDTTTWKGQNGRTLKVGNFPASAVTLADLGGSPVTHPV
                     HRGSPARGEKYRGGTDGDREKAVLQDLPPARNQRRKVPLQRMKGISKSLESVLSLGPR
                     PAGGGSSPPELRRGCTRAWPQGLADLPPRPPDLPPRPPIICSSQPIQPHRVRPKREPL
                     HNHCTGAPGSSKVTIPPGGPLSDSEWQRKIVEVELSVHGVTYQECQMALRTMGGDVAS
                     AIRNLKVDQLFHLSNRSRADCRRILEHHHWDLSAASRYVLARS"
ORIGIN      
        1 gtccacacct agcaggggcg cccggggctg gaaccagcgg gctccctttg gggctatcca
       61 tttaaagcag actgccgtcc tccggagagg tctaacccca gacatgctcc ccgaagccag
      121 ttccctgtgg ctccttcggc tgctccggga cgtccagctg gcccagttct accggcccat
      181 ccttgaggaa ctcaacgtca ctcggccaga acattttgac tttgtaaggc ctgaggacct
      241 ggacaacctt ggcatgggca ggcctgccca acgaagactt actgaagccc tgaagaggta
      301 ccgttcgggg gtcaagtcta agaactgggt gtacaagata cttgggggtt ttgctcctga
      361 acagaaggag atccctccat actcagacag tcttccacac ctccatgagc cagagggggg
      421 actcaagtgt ctgattccag agggtgctgt gtgcagaggg gaactgctgg gttcaggctg
      481 ctttggtgtt gtacatcaag ggctatggac actacccggt ggtcaaagta tcccagtggc
      541 tgtcaagtcc ctccgtgtgg gtcccgaggg tccgatgggc acagaactgg gagacttcct
      601 gcgggaagtg tctgtcatga tgaaactgga gcacccacat gtgctgcgcc tgcatggcct
      661 cgtactgggc cagcctctac agatggtgat ggaacttgcg ccactgggtt ccctgcatgc
      721 gcgcctgact gccccagcac cgatgccccc actgcctgta accctactgt gcctttttct
      781 gcgtcagttg gcaggagcca tggcgtactt ggggtcctgt gggttagtgc acagggatct
      841 tgctacccgt aacctcctgc tagcctcacc tcggaagatc aaggtggctg attttggact
      901 ggtgcggcca ctgggcggcg cccgaggtcg ctacgttatg ggtgggcccc gtcccatccc
      961 ctatgcctgg tgcgctcctg agagcctacg ccagggagcc ttctcggctg cctccgacgt
     1021 gtggatgttt ggcgtgacac tctgggaaat gttttctgga ggcgaggaac cctgggcagg
     1081 tgttccacca tatctcatcc tacagcggct ggagaaggac cgagccaggc tgccaaagcc
     1141 tgccctctgt tccagggccc tctactccct tgccttgcgt tgctgggccc ctcatcctgc
     1201 agaccggcct accttttcca atctggaagg actgcttcaa gaggcttggc tctctgaggg
     1261 gcgctgtgtg agggaggtca cagagccagg tgctttgcgg atggagcccg gtgaccccat
     1321 cactatcatt gagggcagcc cagacaccac aacctggaag ggacagaatg gtcgcaccct
     1381 caaagtgggc aactttccgg cttcagcagt gacactagca gacttggggg gatccccagt
     1441 cacccatcca gtccacagag gttcccctgc ccgtggagag aaatacagag ggggcacaga
     1501 tggggacagg gagaaggcag tgttacaaga cctacccccg gcacggaacc agagaaggaa
     1561 ggtgcccctg cagaggatga aaggcatttc caagagtctg gagtcagttc tgtccctggg
     1621 ccctagaccc gcaggaggtg gttcaagccc tccagaactt cgacgaggat gtactagagc
     1681 ttggcctcaa ggactcgcag acctccctcc acgcccacca gacctgcctc cacgcccacc
     1741 catcatctgc tcctctcagc ccatccagcc ccacagagtc cggcccaaaa gagaaccctt
     1801 acataatcac tgcactggag cgcctgggtc cagcaaagtc actatccccc ctggaggtcc
     1861 cttatcagac tcggagtggc agaggaagat tgtagaggta gagctgagtg tgcatggcgt
     1921 cacctaccag gagtgccaaa tggcactcag aaccatgggg ggagatgtgg cttctgctat
     1981 ccggaacctc aaggtagacc agctcttcca cctcagtaac cggtccagag cagattgtcg
     2041 tcgcattctg gagcatcacc actgggacct gtcagcagcc agtcgctacg tcctggcccg
     2101 gtcctgaact ctgcatcctt ggggatggat cccag
//
