LOCUS       XM_008763001            2476 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TNFAIP3 interacting protein 3 (Tnip3),
            transcript variant X1, mRNA.
ACCESSION   XM_008763001
VERSION     XM_008763001.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008763001.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008763001.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2476
                     /gene="Tnip3"
                     /note="TNFAIP3 interacting protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 18 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:689756"
                     /db_xref="RGD:1588732"
     CDS             173..799
                     /gene="Tnip3"
                     /codon_start=1
                     /product="TNFAIP3-interacting protein 3 isoform X1"
                     /protein_id="XP_008761223.1"
                     /db_xref="GeneID:689756"
                     /db_xref="RGD:1588732"
                     /translation="MAGLSGAGAYMEYTECAAPRRKDLTNSLEQKIKCLEKQRQELLD
                     VNQQWDQQFRNMKELYERKVLELKSKLAAAENTHTLEKKPKQSVTEGDRQLEKEKDIL
                     RKELQALKKENKLLKENNAVANRKKEHYACEIKRLNKVLQDALTIGSSLHSEDLGKCK
                     CRGSHAEMRTEVECHKQQPDYQWNALNQLPPHVQHKAHGFSSESKFNL"
ORIGIN      
        1 tccttgtaca tccttactca gtgtgcttaa cagtcacttc tgttgggagt ctaacgagga
       61 ctttactgcc acaagtctac agagacatag gctttccaga gattttcttt ttctcctttt
      121 tcttctgctt tacaagactc tcagaaaaac agcttccttg tcttcctagg acatggctgg
      181 actgagtggt gctggagctt acatggagta cacagagtgt gctgcaccaa gaagaaagga
      241 cttgacaaat tctcttgaac aaaagataaa gtgcttggaa aaacagagac aagagctcct
      301 ggatgtcaat caacaatggg accagcaatt tcgaaatatg aaagagttat atgaaagaaa
      361 ggtcctggag ctaaaatcta aactggcggc cgcagaaaat actcacaccc tggagaagaa
      421 accgaagcaa agtgtgacag agggcgacag gcagctcgag aaggaaaaag acatcttaag
      481 gaaagaatta caagcactga agaaggagaa caagctgttg aaggaaaaca atgctgtggc
      541 caatcggaag aaagagcact atgcctgtga aatcaaacgc ctcaataagg ttcttcagga
      601 tgccttgaca atcgggagct ctttgcattc tgaggactta gggaagtgta aatgcagggg
      661 cagccatgca gagatgagaa cagaggtgga atgtcacaaa cagcagccag actatcagtg
      721 gaatgctctc aaccagcttc ctccacatgt acagcataag gcacatggtt tctcctcaga
      781 aagcaaattc aacctgtaga attacattag cagagaagag aagaaggctg tgagctctcg
      841 gttgtgaccg ctttgcttct tcaggacagc tgtgaacatt ctccttcgag atctgctccc
      901 agttaccttc actgtggccc ttaaagagga aaagtcagga ccagcgggac acagtacaac
      961 tccacagaca aatcaagctt ctctcctcaa gtgacacagg acagatgatt acacactgtt
     1021 cacaactctc ttcaactaac tactgatgca tttgcaaaga tgactccagg attaacatga
     1081 gtccagctct ggtgccatga cactgtatac ttattcagaa catgcagatc ttaagccaga
     1141 cacagtggcc catctgctaa ttccatggga agttgccaca ggaggattgc agtgatttca
     1201 aggccagcct gggttaccac acaaatgcca cagaagccaa tttctgcatc ttaaaaaaaa
     1261 gtaataataa actgtgtagt ccctaggaga aaaacctatt tccataatgg ctaacttagt
     1321 tcttcagtgg ctgacagctg aactaggtga aatgttcgtt attattgaac ttgaaactac
     1381 atgaatttta atagacagtt gaaagaccca tagactcctc tgacaaaaaa gagtgaatca
     1441 aactaaataa aatgacaagc atgaaactct ccttccagct tttaagcttg tcatagggta
     1501 taagcccctt tcatctctag gtaaaagaca ttctgaaagg ctactgtcct gatgtctcca
     1561 ccctctgtct atatgtagtt agcaagaatt gccaaataca tgtctctttg cctgtgggtt
     1621 tgaaccatgg tttaagaaac ttgactatga ctttttgaac tagttagcct aaaaataacg
     1681 catacataca ttttattgca gttgaattac aatgtgacct agcagattgc taaaagccag
     1741 cggttttaaa ggcattaagc acgtcttcct ctgtaaggtt ttcctagtgt caacttgagc
     1801 tcctgtttgt aaggatgaat gttcgtgaca agagtgtgag aactgcaaac agctaacact
     1861 tctagacgaa cctaaataga ccacggacat acagggcgtg tgcaaagaaa actaccggat
     1921 ctctctagct tcgcttccaa aattatgcgg cttgtctaac tcaaactatt tttgttttaa
     1981 tttgtgggta cacactgcat aatgaggagg taaaaaagtc cccggaaact aagcatttcc
     2041 cctttggtct ttatctatgc tgtaacttaa gagaagcaga atgacccggc cacattagct
     2101 ccttttgctt acacaactgt ttatcagaaa gataagtcat ggttgggtat cacttcaagt
     2161 cagaaaaaca actgtcagct ctagaaaggc atcctgcata ttggaatttt ccgtttcttc
     2221 agactgttaa caagatcatt gtaatgcctg tttctcctgc tgaattaagt atgaaacaaa
     2281 atatggttat agaatttttt taaagtacac acaggaaaac actctttaca gatcggtaac
     2341 gtctgcagca ataaaacata gtttaattat tcaaactgcc tctacactgt caacaaggtg
     2401 ccagacactg gcaagaatgc ataaatgtaa cctaggtgga gaatagtcta ctaataagaa
     2461 ctaattccat ttttca
//
