LOCUS       NM_001191803            1886 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus TNF superfamily member 14 (Tnfsf14), mRNA.
ACCESSION   NM_001191803 XM_236794
VERSION     NM_001191803.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Premzl,M.
  TITLE     Comparative genomic analysis of eutherian tumor necrosis factor
            ligand genes
  JOURNAL   Immunogenetics 68 (2), 125-132 (2016)
   PUBMED   26646413
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Liu,W., Zhan,C., Cheng,H., Kumar,P.R., Bonanno,J.B., Nathenson,S.G.
            and Almo,S.C.
  TITLE     Mechanistic basis for functional promiscuity in the TNF and TNF
            receptor superfamilies: structure of the LIGHT:DcR3 assembly
  JOURNAL   Structure 22 (9), 1252-1262 (2014)
   PUBMED   25087510
REFERENCE   3  (bases 1 to 1886)
  AUTHORS   Ge,Y., Waldemer,R.J., Nalluri,R., Nuzzi,P.D. and Chen,J.
  TITLE     RNAi screen reveals potentially novel roles of cytokines in
            myoblast differentiation
  JOURNAL   PLoS One 8 (7), e68068 (2013)
   PUBMED   23844157
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1886)
  AUTHORS   Kim,H.M., Jeong,C.S., Choi,H.S., Kawada,T. and Yu,R.
  TITLE     LIGHT/TNFSF14 enhances adipose tissue inflammatory responses
            through its interaction with HVEM
  JOURNAL   FEBS Lett 585 (3), 579-584 (2011)
   PUBMED   21236258
REFERENCE   5  (bases 1 to 1886)
  AUTHORS   Smith,A.J., Karpova,Y., D'Agostino,R. Jr., Willingham,M. and
            Kulik,G.
  TITLE     Expression of the Bcl-2 protein BAD promotes prostate cancer growth
  JOURNAL   PLoS One 4 (7), e6224 (2009)
   PUBMED   19593445
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1886)
  AUTHORS   Sedy,J.R., Gavrieli,M., Potter,K.G., Hurchla,M.A., Lindsley,R.C.,
            Hildner,K., Scheu,S., Pfeffer,K., Ware,C.F., Murphy,T.L. and
            Murphy,K.M.
  TITLE     B and T lymphocyte attenuator regulates T cell activation through
            interaction with herpesvirus entry mediator
  JOURNAL   Nat Immunol 6 (1), 90-98 (2005)
   PUBMED   15568026
REFERENCE   7  (bases 1 to 1886)
  AUTHORS   Matsui,H., Hikichi,Y., Tsuji,I., Yamada,T. and Shintani,Y.
  TITLE     LIGHT, a member of the tumor necrosis factor ligand superfamily,
            prevents tumor necrosis factor-alpha-mediated human primary
            hepatocyte apoptosis, but not Fas-mediated apoptosis
  JOURNAL   J Biol Chem 277 (51), 50054-50061 (2002)
   PUBMED   12393901
REFERENCE   8  (bases 1 to 1886)
  AUTHORS   Tamada,K., Shimozaki,K., Chapoval,A.I., Zhai,Y., Su,J., Chen,S.F.,
            Hsieh,S.L., Nagata,S., Ni,J. and Chen,L.
  TITLE     LIGHT, a TNF-like molecule, costimulates T cell proliferation and
            is required for dendritic cell-mediated allogeneic T cell response
  JOURNAL   J Immunol 164 (8), 4105-4110 (2000)
   PUBMED   10754304
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Oct 17, 2022 this sequence version replaced NM_001191803.1.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: LN874407.1, SRR22582419.746910.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680413
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-324               JAXUCZ010000009.1  2159763-2160086     c
            325-361             JAXUCZ010000009.1  2158812-2158848     c
            362-403             JAXUCZ010000009.1  2158463-2158504     c
            404-1886            JAXUCZ010000009.1  2155270-2156752     c
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q11"
     gene            1..1886
                     /gene="Tnfsf14"
                     /gene_synonym="Tnlg1d"
                     /note="TNF superfamily member 14"
                     /db_xref="GeneID:301133"
                     /db_xref="RGD:1588572"
     exon            1..324
                     /gene="Tnfsf14"
                     /gene_synonym="Tnlg1d"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..831
                     /gene="Tnfsf14"
                     /gene_synonym="Tnlg1d"
                     /note="tumor necrosis factor (ligand) superfamily, member
                     14; tumor necrosis factor ligand 1d; tumor necrosis factor
                     superfamily member 14"
                     /codon_start=1
                     /product="tumor necrosis factor ligand superfamily member
                     14"
                     /protein_id="NP_001178732.1"
                     /db_xref="GeneID:301133"
                     /db_xref="RGD:1588572"
                     /translation="MESVVQPSVFVVDGQTDIPFRRLGQNHRRRHCGTVQVSLALLLL
                     LGAGLATEGWFLLRLHQRLGDIVAHLPDGGKGSWEKLIQDQRSHQPNPAAHLTGANAS
                     LIGIGGPLLWETQLGLAFLRGLTYHDGALVTTEAGYYYVYSKVQLSGVGCPQGLANGL
                     PITHGLYKRTSRYPKELELLVSRRSPCGRANSSRVWWDSSFLGGVVHLEAGEEVVVRV
                     PGNRLVRPRDGTRSYFGAFMI"
     exon            325..361
                     /gene="Tnfsf14"
                     /gene_synonym="Tnlg1d"
                     /inference="alignment:Splign:2.1.0"
     exon            362..403
                     /gene="Tnfsf14"
                     /gene_synonym="Tnlg1d"
                     /inference="alignment:Splign:2.1.0"
     exon            404..1886
                     /gene="Tnfsf14"
                     /gene_synonym="Tnlg1d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttttgcagt ttgcaaagcc caagcattgg gcaattgtgg tttcctccgg agagaaggaa
       61 ctcaggctcg ccaaccctga ccctgggctt ctgagcctca gctgctctgg catggagagt
      121 gtggtacagc cttcagtgtt tgtggtggat ggacagacag acatcccatt caggcggctg
      181 ggacagaacc acaggagacg gcactgcggc actgtccagg tcagcctggc cctgctgctg
      241 ctgctgggtg ctgggctggc cactgagggc tggtttctcc tgagactgca tcagcgtctt
      301 ggggacatag tagctcatct gccagatgga ggcaaaggct cctgggagaa gctgatacaa
      361 gatcaacgat ctcaccagcc caacccagca gcacatctca caggagctaa cgccagcttg
      421 ataggcattg gtggacctct gttatgggag acacaacttg gcctggcctt cctgaggggc
      481 ctgacgtatc atgatggggc cctggtgacc accgaggctg gctactacta cgtgtactcc
      541 aaagtgcagt tgagtggtgt gggctgcccc caggggctgg ccaatggcct ccccatcacc
      601 cacgggctgt acaagcgcac atcccgatac cccaaggagt tagaactgct ggtcagccgg
      661 cggtcacctt gtggccgggc caacagctcc cgagtctggt gggacagtag tttcctcggc
      721 ggagtggtac atctggaggc cggagaagag gtggtggtcc gcgtgcctgg aaaccgcctg
      781 gtcagaccac gtgatggcac gaggtcctat ttcggagctt tcatgatctg aaggctatga
      841 cgacaatgga ttttgtggag ggacctgtca aggactcacc tcaaacccag caaccgggtt
      901 tgaagtcccc cctttaagga gccctgaact ctgcaggtgg tgtattcgga agggtgtgaa
      961 ccgctgacct gctttgggca atcttcaaat cggagaccta gagacttggg gtatgaaacc
     1021 caggagtgtg ggggtcagtc catttgcctg atattcagga agaaagaata aagctggagt
     1081 atttatgctt ctgatgcaga caccaagatt tgggctttct gggttttggg ctggaggtaa
     1141 gaaacctctc cagagtgtca tcaggaccat ggtggcagca cttggtccac acttgccacc
     1201 acacactgga ctctcccatc catccactgc gttggggttt ccagtcacca aaacagcatt
     1261 ggccctgggc tgcaactggc cagctaccag cttctgagca ctacatcctt cagggacatc
     1321 ttgatgggac ctcagtgctc agcccaaccc gcagcagcga cagacatggc agtaatggtt
     1381 gatcagaggg gaagggagaa aagggaagaa aggaggaaat gcagaaaaga aggggggggg
     1441 gacaaaacca aaaaacaaaa caaaggatga agaggcaggg aaggggagcg ccaccctcca
     1501 gggtgcttta ttcaacacaa ttagaacaga ttgtgtcagg cttactggac ccctggggtt
     1561 gatgaagaca gagggcttga gatatggctc agtgggtcaa gtgcagtttt atgaggatct
     1621 gagtttgaat ccccagaacc catataaaga cacagatgtg gtgatggaca cttggcagac
     1681 ccatcaggga agggagacag gaggagccct ggggttcact ggccaggcag tctagctatc
     1741 agtgagctcc aggttcaggg agagacctgt cctatgaaag gtagcgaggt cctcaggcta
     1801 atctctgacc ttacatgcag gacacatgaa taacgaataa aataaaaaca ctaaataata
     1861 gtatttgaga ggcactttat gtgttc
//
