LOCUS       XM_039085455            1887 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TNF superfamily member 13 (Tnfsf13),
            transcript variant X5, mRNA.
ACCESSION   XM_039085455
VERSION     XM_039085455.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1887
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /note="TNF superfamily member 13; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 105 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:287437"
                     /db_xref="RGD:1305871"
     CDS             793..1518
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /codon_start=1
                     /product="tumor necrosis factor ligand superfamily member
                     13 isoform X4"
                     /protein_id="XP_038941383.1"
                     /db_xref="GeneID:287437"
                     /db_xref="RGD:1305871"
                     /translation="MPASSPGNMGGSVREPALSVTLWLSWGAVLGAVTCAVALLIQQA
                     ELQSLRREVSRLQRSGGASQKRGEPPWQSLWEQSPDVLGAWKDGAKSRRRRAVLTQKH
                     KTDSDMTEVMWQPALRRGRGLEAQGDTVRVRDTGIYLLYSQVLFHDVTFTMGQVVSRE
                     GQGRRETLFRCIKSMPSDPDRAYNSCYSAGVFHLHQGDIITVKIPRANAKLSLSPHGT
                     FLGGFVHCAKPYPLDCIQNSTTI"
ORIGIN      
        1 ctggtcctct gcacaaggcg ctgcagaagc agcctcattt tcctagcagc ggacttcctc
       61 ctgcagggga atccctggct gggaggagca gggtccttcc tcttggcggc ctcaggacat
      121 tcagcagttg agcagagaac cttatgtaag aactcttctt gggaaacagg aagtccggct
      181 tgccaagttc agcacaggga gtagtgcagg cctggttcca acacacccgg cccagcctta
      241 accccagcac cctgccagtt tcttgtcctt ggttctcctc cctgctggcc cctagccccc
      301 cttttttttt catttccagt cacccctaac aagcctcctc aaagctgtca tttgtgcctc
      361 aggcagagag agagtccacc acactcacct tctaaggctc atgctgctga gcttgtcccc
      421 attccctgcc cctggcacca tgccccataa ccaaccgacc ttccctcctc caacttaggg
      481 gccgcccctg ggctcctgaa cgctgaccgc tccttctggg tgtcacggct gccctgccct
      541 tcctagataa ttggcaccaa attctcctga ggcttggggg ggagggggcc aggggtgtca
      601 gagggacact agctggggat caggggacta ataggaccct agcttgattt cttcctattc
      661 tcaagttcct ttttatttct cccttgcgta actcgctctt cccttctgcg cctttgcctg
      721 tattcccacc ctccctgcta cctcctggcc acctcacttg cagcccacag ctgtcagcag
      781 ggtccctagc tcatgccagc ctcatctcca ggcaacatgg gaggctcagt cagagagcca
      841 gccctttcgg tcactctttg gttgagttgg ggggcagttc tgggggctgt gacttgtgct
      901 gtcgcactac tgatccaaca agcagagttg cagagcctaa ggcgggaggt gagccggctg
      961 cagcggagtg gaggagcttc ccagaagcgg ggagagcctc catggcagag cctctgggaa
     1021 cagagtcctg atgtcctggg agcctggaag gatggggcca aatctcggag aaggagagca
     1081 gtactcaccc agaagcacaa gacagactct gacatgacag aggtgatgtg gcaaccagct
     1141 cttaggcgtg ggagaggcct ggaggcccaa ggagacactg ttcgagtccg ggacactgga
     1201 atttatctgc tatatagtca ggtcctgttt catgatgtga ctttcaccat gggtcaggtg
     1261 gtatctcggg aaggccaagg gagaagggag actctattcc ggtgtatcaa aagtatgcct
     1321 tctgatcctg accgtgccta caacagctgc tacagtgcag gtgtctttca cttacatcaa
     1381 ggggatatta tcactgtcaa aattcctcgg gcaaacgcaa aacttagcct ttctccacat
     1441 ggaacattcc tggggggttt tgtgcactgt gccaagcctt atccactgga ctgcatccag
     1501 aacagcacca ccatctagag gcagtttgag gaaagaacac ggtctctgct agggaaaacg
     1561 tgtccctcgg ccacaactct tcaagccccc tgcttcaatg tacaagaagc ccgattttca
     1621 ctatctcact attgcgtcca aattcttgtt actgtctaga aaaaaaatgt attttaggtg
     1681 cctcgacatc cattccattc atgctcccca ttcccctagc aaacttccga gctgaacatt
     1741 gtgcttcacc gctttaatcc cagtactcgg aggcctattt ctatgttagc ggtcaacttg
     1801 gtctaaatag tgagttccag gccatccagg ggttacagtg gttgagaccc tgtttcaaac
     1861 aaacaaataa aagactctac aagatcg
//
