LOCUS       NM_001009623            1669 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus TNF superfamily member 13 (Tnfsf13), mRNA.
ACCESSION   NM_001009623 XM_213352
VERSION     NM_001009623.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Bath,N.M., Verhoven,B.M., Wilson,N.A., Zeng,W., Zhong,W., Coons,L.,
            Djamali,A. and Redfield,R.R. 3rd.
  TITLE     APRIL/BLyS deficient rats prevent donor specific antibody (DSA)
            production and cell proliferation in rodent kidney transplant model
  JOURNAL   PLoS One 17 (10), e0275564 (2022)
   PUBMED   36227902
  REMARK    GeneRIF: APRIL/BLyS deficient rats prevent donor specific antibody
            (DSA) production and cell proliferation in rodent kidney transplant
            model.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Premzl,M.
  TITLE     Comparative genomic analysis of eutherian tumor necrosis factor
            ligand genes
  JOURNAL   Immunogenetics 68 (2), 125-132 (2016)
   PUBMED   26646413
REFERENCE   3  (bases 1 to 1669)
  AUTHORS   Chang,Y., Jia,X., Sun,X., Xu,S., Wu,Y., Zhang,L. and Wei,W.
  TITLE     APRIL promotes proliferation, secretion and invasion of
            fibroblast-like synoviocyte from rats with adjuvant induced
            arthritis
  JOURNAL   Mol Immunol 64 (1), 90-98 (2015)
   PUBMED   25466610
  REMARK    GeneRIF: APRIL may act as an important mediator for facilitating
            the function of fibroblast-like synoviocyte.
REFERENCE   4  (bases 1 to 1669)
  AUTHORS   Alexaki,V.I., Notas,G., Pelekanou,V., Kampa,M., Valkanou,M.,
            Theodoropoulos,P., Stathopoulos,E.N., Tsapis,A. and Castanas,E.
  TITLE     Adipocytes as immune cells: differential expression of TWEAK, BAFF,
            and APRIL and their receptors (Fn14, BAFF-R, TACI, and BCMA) at
            different stages of normal and pathological adipose tissue
            development
  JOURNAL   J Immunol 183 (9), 5948-5956 (2009)
   PUBMED   19828625
REFERENCE   5  (bases 1 to 1669)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   6  (bases 1 to 1669)
  AUTHORS   Planelles,L., Carvalho-Pinto,C.E., Hardenberg,G., Smaniotto,S.,
            Savino,W., Gomez-Caro,R., Alvarez-Mon,M., de Jong,J., Eldering,E.,
            Martinez-A,C., Medema,J.P. and Hahne,M.
  TITLE     APRIL promotes B-1 cell-associated neoplasm
  JOURNAL   Cancer Cell 6 (4), 399-408 (2004)
   PUBMED   15488762
REFERENCE   7  (bases 1 to 1669)
  AUTHORS   Castigli,E., Scott,S., Dedeoglu,F., Bryce,P., Jabara,H., Bhan,A.K.,
            Mizoguchi,E. and Geha,R.S.
  TITLE     Impaired IgA class switching in APRIL-deficient mice
  JOURNAL   Proc Natl Acad Sci U S A 101 (11), 3903-3908 (2004)
   PUBMED   14988498
REFERENCE   8  (bases 1 to 1669)
  AUTHORS   Varfolomeev,E., Kischkel,F., Martin,F., Seshasayee,D., Wang,H.,
            Lawrence,D., Olsson,C., Tom,L., Erickson,S., French,D., Schow,P.,
            Grewal,I.S. and Ashkenazi,A.
  TITLE     APRIL-deficient mice have normal immune system development
  JOURNAL   Mol Cell Biol 24 (3), 997-1006 (2004)
   PUBMED   14729948
REFERENCE   9  (bases 1 to 1669)
  AUTHORS   Yu,G., Boone,T., Delaney,J., Hawkins,N., Kelley,M.,
            Ramakrishnan,M., McCabe,S., Qiu,W.R., Kornuc,M., Xia,X.Z., Guo,J.,
            Stolina,M., Boyle,W.J., Sarosi,I., Hsu,H., Senaldi,G. and
            Theill,L.E.
  TITLE     APRIL and TALL-I and receptors BCMA and TACI: system for regulating
            humoral immunity
  JOURNAL   Nat Immunol 1 (3), 252-256 (2000)
   PUBMED   10973284
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Apr 19, 2023 this sequence version replaced NM_001009623.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087135.1, SRR26643286.30750.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840115,
                                           SAMN12840116 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-525               JAXUCZ010000010.1  54901291-54901815   c
            526-604             JAXUCZ010000010.1  54900901-54900979   c
            605-652             JAXUCZ010000010.1  54900718-54900765   c
            653-768             JAXUCZ010000010.1  54900452-54900567   c
            769-907             JAXUCZ010000010.1  54900094-54900232   c
            908-1669            JAXUCZ010000010.1  54898805-54899566   c
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1669
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /note="TNF superfamily member 13"
                     /db_xref="GeneID:287437"
                     /db_xref="RGD:1305871"
     exon            1..525
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /inference="alignment:Splign:2.1.0"
     CDS             295..1017
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /note="tumor necrosis factor superfamily member 13; tumor
                     necrosis factor (ligand) superfamily, member 13; tumor
                     necrosis factor ligand 7b"
                     /codon_start=1
                     /product="tumor necrosis factor ligand superfamily member
                     13"
                     /protein_id="NP_001009623.1"
                     /db_xref="GeneID:287437"
                     /db_xref="RGD:1305871"
                     /translation="MPASSPGNMGGSVREPALSVTLWLSWGAVLGAVTCAVALLIQQA
                     ELQSLRREVSRLQRSGGASQKRGEPPWQSLWEQSPDVLGAWKDGAKSRRRRAVLTQKH
                     KKKQSVLHLVPINITSKDSDMTEVMWQPALRRGRGLEAQGDTVRVRDTGIYLLYSQVL
                     FHDVTFTMGQVVSREGQGRRETLFRCIKSMPSDPDRAYNSCYSAGVFHLHQGDIITVK
                     IPRANAKLSLSPHGTFLGFVKL"
     exon            526..604
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /inference="alignment:Splign:2.1.0"
     exon            605..652
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /inference="alignment:Splign:2.1.0"
     exon            653..768
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /inference="alignment:Splign:2.1.0"
     exon            769..907
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /inference="alignment:Splign:2.1.0"
     exon            908..1669
                     /gene="Tnfsf13"
                     /gene_synonym="April; Tnlg7b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacgctgacc gctccttctg ggtgtcacgg ctgccctgcc cttcctagat aattggcacc
       61 aaattctcct gaggcttggg ggggaggggg ccaggggtgt cagagggaca ctagctgggg
      121 atcaggggac taataggacc ctagcttgat ttcttcctat tctcaagttc ctttttattt
      181 ctcccttgcg taactcgctc ttcccttctg cgcctttgcc tgtattccca ccctccctgc
      241 tacctcctgg ccacctcact tgcagcccac agctgtcagc agggtcccta gctcatgcca
      301 gcctcatctc caggcaacat gggaggctca gtcagagagc cagccctttc ggtcactctt
      361 tggttgagtt ggggggcagt tctgggggct gtgacttgtg ctgtcgcact actgatccaa
      421 caagcagagt tgcagagcct aaggcgggag gtgagccggc tgcagcggag tggaggagct
      481 tcccagaagc ggggagagcc tccatggcag agcctctggg aacagagtcc tgatgtcctg
      541 ggagcctgga aggatggggc caaatctcgg agaaggagag cagtactcac ccagaagcac
      601 aagaagaagc agtccgttct gcatcttgtt ccaattaaca ttacctccaa ggactctgac
      661 atgacagagg tgatgtggca accagctctt aggcgtggga gaggcctgga ggcccaagga
      721 gacactgttc gagtccggga cactggaatt tatctgctat atagtcaggt cctgtttcat
      781 gatgtgactt tcaccatggg tcaggtggta tctcgggaag gccaagggag aagggagact
      841 ctattccggt gtatcaaaag tatgccttct gatcctgacc gtgcctacaa cagctgctac
      901 agtgcaggtg tctttcactt acatcaaggg gatattatca ctgtcaaaat tcctcgggca
      961 aacgcaaaac ttagcctttc tccacatgga acattcctgg ggtttgtgaa actatgactg
     1021 tgctataaag gtggggttcc cattccaaga actggctaga caaaggacag caagtggtca
     1081 agaaccgttc tccttggttt tgacgtcttg actgttgttc cccgctttgc ctttcccgat
     1141 cccactatct gggttctgat tccatagata ttaaagaagt agaatatttt gtgtctatct
     1201 cccacatggc cccaaattct tttgttgtgt gtgttaaagg ggttttgtgc actgtgccaa
     1261 gccttatcca ctggactgca tccagaacag caccaccatc tagaggcagt ttgaggaaag
     1321 aacacggtct ctgctaggga aaacgtgtcc ctcggccaca actcttcaag ccccctgctt
     1381 caatgtacaa gaagcccgat tttcactatc tcactattgc gtccaaattc ttgttactgt
     1441 ctagaaaaaa aatgtatttt aggtgcctcg acatccattc cattcatgct ccccattccc
     1501 ctagcaaact tccgagctga acattgtgct tcaccgcttt aatcccagta ctcggaggcc
     1561 tatttctatg ttagcggtca acttggtcta aatagtgagt tccaggccat ccaggggtta
     1621 cagtggttga gaccctgttt caaacaaaca aataaaagac tctacaaga
//
