LOCUS       XM_006239586            2241 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TNF receptor superfamily member 14
            (Tnfrsf14), transcript variant X5, mRNA.
ACCESSION   XM_006239586
VERSION     XM_006239586.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006239586.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006239586.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2241
                     /gene="Tnfrsf14"
                     /note="TNF receptor superfamily member 14; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 15 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     53 samples with support for all annotated introns"
                     /db_xref="GeneID:366518"
                     /db_xref="RGD:1310115"
     CDS             236..1108
                     /gene="Tnfrsf14"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 14 isoform X3"
                     /protein_id="XP_006239648.1"
                     /db_xref="GeneID:366518"
                     /db_xref="RGD:1310115"
                     /translation="MGLLACSVLIKKMEPLPGWESSPWSRADNTFRLVPCVFLLNLLQ
                     CISAQPLCRQEEFSVGDECCPMCNPGYHVKQVCSEHTGTVCAPCPPQTYTAHANGLSK
                     CLPCGVCDPDMGLLTWQECSSWKDTVCRCISGYFCENQDGGACSTCLPHAACPPGQRV
                     QKRGTYSHDTVCADCLTGTFSLGGTQEECLPWTKCSTFQREVKHGTSSTDTTCSFQTF
                     YIVVVIVGVAIVGAGVVVFLLRKQRQRHTSIVASELEAFQQEQQEDAIRFPVIEVGPS
                     VTEEEAAFNCMNSG"
ORIGIN      
        1 cgcagctccc atcctcatct gcagatggaa aataagtctg ctctgcctgg tccctctcag
       61 gggacggtta gagaggccca cggcctgctc gagtttgata agaagcccag cttcaccctt
      121 agaagataaa gctcctgttc ctagggcctt cggtgctcaa gcgtgtgaag cgtaaaggct
      181 gaggaaccgc gttttagctg gggctcatga gagtgtgtga ggaggtccaa agtccatggg
      241 gctcctggcc tgcagtgtct tgattaagaa aatggaacct ctcccgggat gggagtcgtc
      301 accctggagc cgggcagaca acaccttcag gctggtgccg tgtgtcttcc ttttgaactt
      361 gttgcagtgt atctctgccc agcccttgtg cagacaggag gagttttctg ttggggatga
      421 gtgctgcccc atgtgcaatc caggttacca tgtgaagcag gtctgcagtg agcatacagg
      481 cacagtgtgt gccccctgtc ccccacagac ctataccgcc catgcgaatg gcctgagcaa
      541 gtgtctgccc tgcggagtct gtgatccaga catgggcctg ctgacctggc aggagtgctc
      601 cagctggaag gacactgtgt gcagatgcat ctcaggttac ttctgtgaga accaggatgg
      661 gggcgcctgt tccacatgct tgcctcacgc cgcctgccct ccaggacaga gggtacagaa
      721 gagaggtact tacagccatg acactgtatg tgctgactgc ctgacaggaa ccttctcact
      781 tggcgggact caggaggaat gcctgccctg gaccaagtgc agtacctttc aacgggaagt
      841 aaaacatggg accagcagca cagacaccac ctgctccttc cagaccttct acatcgtcgt
      901 tgtgatagtg ggagttgcga tagtgggagc tggggtagtt gtattcctcc tccgcaagca
      961 aagacagcgg cataccagca tagtggccag tgagctggag gctttccagc aggagcaaca
     1021 agaggacgcc atcaggtttc cagtcatcga ggttggtcct tctgtgaccg aggaggaggc
     1081 agccttcaac tgcatgaatt cggggtgatg agacaccttg gagaccctga tgggaagttt
     1141 ccatatgcca gaggggcacg gcagatgccc tgggctgcta cggcatcaca tggcagggga
     1201 gatgttgcca tggcccaggg tgtagcagtt gctttgtcct tcttagtgtt aaatgggatc
     1261 atctgcgccc atgcaaacga tccaaagtct gtatcagtga cagttaccac agaccctatg
     1321 ccctacttcc caaatcttcc agacagcctg tctaaaccct aggcctttga ccgtcctgga
     1381 aatgttaaag gctgctcatc cagagggctg ctgagcacgg ccttctgggg tcagggtgct
     1441 tgcgatgaga caagaatatg gcattggtgg attttatttt gaagtttctg gggctggaat
     1501 cttgcccata ccaggcaagt gctttattcc tgagctacat tcccaagact ctttccgttt
     1561 tttatcttga ggcaaagtca cacggaattg tctgggccaa ccatggactc cttctgtatc
     1621 ttgggcaagc ctcaaacttg acgcttctac ctctgctctt caagtaacac tgtgatgacc
     1681 tgcgtggtcc tccagacggg gcgggtcaat gccttctatt ttctttgtgt gtgtgtgtgt
     1741 gtgtgtgtgt gtgtgtgtgt gtgtgtgcac acgcgtacct gttaccccct tttcccaccg
     1801 gacctagccc cagagagttt tctgcaggcc ccagagaact aagttttact ccctcagaca
     1861 caagtctgct gagggattga ttaatcactg actccacacc tctcctcagt gtacctgacc
     1921 tgtcaaagct ggtcttcagt acttgttcct tagtagctag ccatcttgag ccagcccgag
     1981 gctcatcaat tcagctagat cggcctacca ctgagcgttg ggcatcccct tggctctgcc
     2041 ttctcagcgc tgggtttagg gcacacagca ctatgccaaa cttctaaagt ggattctggg
     2101 gatgagccca gtttcaagaa tgcaggtcct ttctcatgct gtggaacagc actcttagtg
     2161 accaaaccat tcccttggct tcagaatgaa tgtctaagtt attttctact tgtcatagga
     2221 aataaatatt tttgttacac a
//
