LOCUS       NM_001107387            1830 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus TNF alpha induced protein 8 (Tnfaip8), mRNA.
ACCESSION   NM_001107387 XM_001056720 XM_008772149 XM_225940
VERSION     NM_001107387.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1830)
  AUTHORS   Dai,H., Ji,X., Huang,X., Li,W. and Shi,Z.
  TITLE     MiR-379 relieves myocardial injury after acute myocardial
            infarction by regulating tumor necrosis factor-alpha-induced
            protein 8
  JOURNAL   Panminerva Med 64 (1), 31-37 (2022)
   PUBMED   32414226
  REMARK    GeneRIF: MiR-379 relieves myocardial injury after acute myocardial
            infarction by regulating tumor necrosis factor-alpha-induced
            protein 8.
REFERENCE   2  (bases 1 to 1830)
  AUTHORS   Zhang,S., Zhang,Y., Wei,X., Zhen,J., Wang,Z., Li,M., Miao,W.,
            Ding,H., Du,P., Zhang,W., He,M. and Yi,F.
  TITLE     Expression and regulation of a novel identified TNFAIP8 family is
            associated with diabetic nephropathy
  JOURNAL   Biochim Biophys Acta 1802 (11), 1078-1086 (2010)
   PUBMED   20699119
  REMARK    GeneRIF: Findings demonstrate that TNFAIP8 is one of critical
            components of a signal transduction pathway that links mesangial
            cell proliferation to diabetic renal injury.
REFERENCE   3  (bases 1 to 1830)
  AUTHORS   Ahn,S.H., Deshmukh,H., Johnson,N., Cowell,L.G., Rude,T.H.,
            Scott,W.K., Nelson,C.L., Zaas,A.K., Marchuk,D.A., Keum,S.,
            Lamlertthon,S., Sharma-Kuinkel,B.K., Sempowski,G.D. and Fowler,V.G.
            Jr.
  TITLE     Two genes on A/J chromosome 18 are associated with susceptibility
            to Staphylococcus aureus infection by combined microarray and QTL
            analyses
  JOURNAL   PLoS Pathog 6 (9), e1001088 (2010)
   PUBMED   20824097
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1830)
  AUTHORS   Kumar,D., Gokhale,P., Broustas,C., Chakravarty,D., Ahmad,I. and
            Kasid,U.
  TITLE     Expression of SCC-S2, an antiapoptotic molecule, correlates with
            enhanced proliferation and tumorigenicity of MDA-MB 435 cells
  JOURNAL   Oncogene 23 (2), 612-616 (2004)
   PUBMED   14724590
REFERENCE   5  (bases 1 to 1830)
  AUTHORS   Kumar,D., Whiteside,T.L. and Kasid,U.
  TITLE     Identification of a novel tumor necrosis factor-alpha-inducible
            gene, SCC-S2, containing the consensus sequence of a death effector
            domain of fas-associated death domain-like interleukin-
            1beta-converting enzyme-inhibitory protein
  JOURNAL   J Biol Chem 275 (4), 2973-2978 (2000)
   PUBMED   10644768
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On or before Mar 19, 2021 this sequence version replaced
            XM_008772149.3, NM_001107387.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.597563.1,
                                           SRR26643289.41419.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-164               JAXUCZ010000018.1  45444966-45445129
            165-1830            JAXUCZ010000018.1  45484371-45486036
FEATURES             Location/Qualifiers
     source          1..1830
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q11"
     gene            1..1830
                     /gene="Tnfaip8"
                     /note="TNF alpha induced protein 8"
                     /db_xref="GeneID:307428"
                     /db_xref="RGD:1305908"
     exon            1..164
                     /gene="Tnfaip8"
                     /inference="alignment:Splign:2.1.0"
     CDS             92..730
                     /gene="Tnfaip8"
                     /note="tumor necrosis factor, alpha-induced protein 8"
                     /codon_start=1
                     /product="tumor necrosis factor alpha-induced protein 8"
                     /protein_id="NP_001100857.2"
                     /db_xref="GeneID:307428"
                     /db_xref="RGD:1305908"
                     /translation="MSVAVVPAAVHPDSMLSEAEEPREVATDVFNSKNLAVQAQKKIL
                     GKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKVIKNLIKTVIKLAVLHRN
                     NQFNQDELALMEKFKRKVHQLAMTVVSFHQVEYTFDRNVLSRLLNECRELLHDIIQRH
                     LTAKSHGRVNNVFDHFSDCDFLAALYNPFGKFKPHLQKLCDGINKMLDEENI"
     exon            165..1830
                     /gene="Tnfaip8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccccgggag gttctgatct cagaggcttc ctcccaccgc gtcccgcccg cgcacatcac
       61 actggtctgg gagcctcgca gcctcacgtc catgtccgtg gcagtggtgc ctgcggctgt
      121 gcaccccgac agcatgctct ccgaggcgga ggagcccagg gaagtggcta cagatgtctt
      181 taattccaaa aacctggccg ttcaggcaca aaagaagatc ctgggtaaaa tggtatccaa
      241 atccatcgcc accaccctga tcgatgacac cagcagcgag gtcctggatg agctgtacag
      301 ggtgaccaag gagtacaccc agaacaagaa ggaggcagag aaggtcatca agaacctcat
      361 caagacggtc atcaagctgg ccgttctcca caggaacaat cagttcaacc aagacgagct
      421 ggccttgatg gagaagttca agagaaaggt gcaccagctg gccatgacgg tggtgagctt
      481 tcaccaggta gagtacacct ttgaccgcaa cgtgctgtcc aggctgctga acgagtgccg
      541 agagctcctg cacgacatca ttcagcgcca ccttaccgcc aagtctcacg gacgggttaa
      601 taacgtcttt gatcattttt cagattgtga ttttttggct gccttgtata atccctttgg
      661 aaaatttaaa cctcacttac agaaactttg tgacggcatc aacaaaatgt tggatgaaga
      721 gaacatatga gcttgtgaga gaagaccgtg accagcagcg atttttgtga cgtggagcac
      781 tgctgactca taaagggaag acagagaatc ttttagagat cgcatgtttt tcagaaaggc
      841 ttggccccat acagcctgtt gttgttggac attcatagta gaactcctgt gtggcttgtt
      901 gtatttgaaa gaaagaaaaa aagcatattg ctaaaaaatc tggctgaaaa taccttaatg
      961 aatggcagga tgtgggaaaa atggatggtt ggtcattcag atgtctagtg atacaaagac
     1021 agatgagtgt ggccccaagc gctggcactt gctgtgtttt aggggaatcg tattggtggc
     1081 acattggata tttctaatat gtattaaagc tgtgtatctt gactcacctt tatcctttgc
     1141 tatgtctgcg tatctctctt aaaatgccaa gaacctctct tttgctgtca tcgatccttt
     1201 ggaaacaatt ttgcttcttt agttacaggt tgtcattgac ctttaggaat taaatctgag
     1261 gggttgggga tttagctcag tggtagagcg ctcaaggccc tgggttcggt ccccagctcc
     1321 gaaaaaaaga aaaacaaaag ggaattaaat ctgaggcagt caaaccgaat gctcaggaaa
     1381 gcagagacct gcatctgaag tcatgaccgt ggaaatgagc aatcttaaca tcgtgagtaa
     1441 catccaccgc agcttttgaa gctgagtcct actttttagt accatcagtg agacttagag
     1501 tctcaaaacc agtggcatgg cattgccttg aaatacttgc ttagggccta actttgatgt
     1561 catcttgaac aggtgctcac atgttcccgt attaacatcc atttcacccg taggaagaat
     1621 aaattcctag attggctttg atattgagac aacaacatgt aagtagcatt tcagaaataa
     1681 aaagaaaaac ttcttgagtt taaagatgaa ctcatcaggt tgacttaggg gggaaaggat
     1741 agcaaggatg ttgcgaagta atgtaagaaa gatgcatgaa tttcagtgtg aatggggatt
     1801 gatgaataaa agacgccatt ttttatttaa
//
