LOCUS       XM_039098825            6378 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TNF alpha induced protein 3 (Tnfaip3),
            transcript variant X1, mRNA.
ACCESSION   XM_039098825
VERSION     XM_039098825.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098825.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6378
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6378
                     /gene="Tnfaip3"
                     /note="TNF alpha induced protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     ESTs, 12 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 136
                     samples with support for all annotated introns"
                     /db_xref="GeneID:683206"
                     /db_xref="RGD:1589275"
     CDS             2124..4568
                     /gene="Tnfaip3"
                     /codon_start=1
                     /product="tumor necrosis factor alpha-induced protein 3
                     isoform X1"
                     /protein_id="XP_038954753.1"
                     /db_xref="GeneID:683206"
                     /db_xref="RGD:1589275"
                     /translation="MTRSNTGVSCRQVYGSSVKGRLTEWAFPLPLQALSRTMAEQLLP
                     QALYLSNMRKAVKIRERTPEDIFKPSNGIIHHFKTMHRYTLEMFRTCQFCPQFREIIH
                     KALIDRSVQASLESQKKLNWCREVRKLVALKTNGDGNCLMHAACQYMWGVQDTDLVLR
                     KALCSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLVKMASADTPA
                     ARSGLQYNSLEEIHIFVLSNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWP
                     AQECYRYPIVLGYDSQHFVPLVTLKDSGPEIRAVPLVNRERGRFEDLKVHFLTDPEHE
                     MKEKLLKEYLMVLEIPVQGWDHGTTHLINAAKLDEANLPKEINLVDDYFELVQHEYKK
                     WQENGDQGRRGAHAQNPLEASTPQLSLMDIKCETPNCPFFMSVNTQPLCHECSERRQK
                     NQSKLPKLNSKLGPEGGLPAVGLGSSNWNPEETAGGPHSAPPTAPSLFLFSETTAMKC
                     RSPGCPFTLNVQHNGFCERCHNARQMSASHTADPGKCQACLQDVTRTFNGICSTCFKR
                     TTAEPTSSLTSSVPPSCHQRSKSDPSQLIQSLTPHSCHRTGNAVPSGYLSQTSRTPAD
                     RTGTSKCRKAGCMYFGTPENKGFCTLCFIEYRENKQSVTASGKAASSAPRFQNNIPCL
                     GRECGTLGSTMFEGYCQKCFIEAQNQRFHEAKRPEEQLRSSQRREMPRTTQGASRPKC
                     ARASCKNILACRSEELCMECQHLSQRIASLAHRGEPTPEEPPKQRCRAPACDHFGNAK
                     CNGYCNECYQFKQMYG"
ORIGIN      
        1 tgaagaacct tattgatcct gtgacaaaaa ttgggaaatt tatctgtaag ggagtgaggt
       61 aacaaatata tttttaaaag ttaagggtag tgctttaatt tttttttttt acccataaaa
      121 cattacaatg atatgtcagg aaactttatt ctctaaatgt ggggaagtcc aagaactgga
      181 aacttgggca gagggaggtt taagctctgt cttaaatagg cacttttgca cgcagtgcaa
      241 ggcagagtcc gtgaacgggg tcttagtggg ctgacagata ctgacctttg catgtcttac
      301 atatggctta gagcccccgc cacttttaga tctatgctaa aagttcttga ggtccagaag
      361 agcaaaatag aatagccata aaaatagaac aaggtgcagc tcactgatgc aaaacttctc
      421 cttgcctgtt tctgagagct gcaaatgctg tacgccaggg ttgctatcag gagaccagca
      481 agggattgag atggggaata ggaagacttg gcttatgagc agagctgcat ccttacgtct
      541 gctggacctg agatgggtct gaccatcact gccttagctg caggggttgt ctgacagata
      601 tcaaggctag gagtgaaatc atacattttt agctatcgca tcaggcacaa gggttggcct
      661 taaataggtg gtccagcctt gctgcttgca tgcatccatt catggatggg gtgatgacat
      721 tgtgagagag accatgctat atcaccaagg agatgtatgt gtggtagttt tgtcccattc
      781 tgtctatgtt tctgcctaat tctacttgcg aggcgcaact gtcatcaggc acagagaata
      841 acttccaggc ctcagcatcc caatgcaaat tcccaggagc agcccctccc ttccaagcag
      901 ggaacaagaa cttacgattt cttttccctc ttgcatagtc ttaacaccgt ttttatttta
      961 acctggtgag tttgcattgg aggatagtat ggtgccggag tggcattaag cttcgctgag
     1021 aaatttccta ggtgctctat atcatttctg tcttctagga aattaggatg tgtggtcaag
     1081 tgcccaagga gggtctgtga ggacagtgaa gcagacctgg atggccattg atccacattg
     1141 gtctctctgc atcatcagtc cacattcgtg catagttggc gtgggtggtc atatggccag
     1201 tcttcgtcct gagtggtacc ccactccaat acttcctgtt cgtttcctga tttcatttcc
     1261 tccacctttg attgcgctcg atcttttatg gtaaaggaag gagggtgttg aggtctctga
     1321 gcattgggat ctggaagggc agccataaat aaaagttggt ctagttgagt taaagtcata
     1381 gagcgcgctg gtgtctgttc cccccccccc cacctctctg ggaggtgtga tataccttag
     1441 tatccctctg ttcatttgtc tcacgctgtg aggttcagtg gcaaggttct gaaatccagc
     1501 tgacgtttat ttgcttttaa gattgtgaag gatctggcca gaaatcagct tcgtttttgt
     1561 ttctgttttt gttttgtttt tttttttccg ttgttggtta taaaacaatt tggcgtcggc
     1621 tctttataaa tatcggctct ttataaatat cataaaccga gcatttatac atgtctttgg
     1681 ggtcaataag aaagaggaaa taccaagcaa gcagctagat gccacacggg atttccaaaa
     1741 ctacttgctg cctttgcagc atcgagaaag gggatgttcg aatgacctga atctagacgt
     1801 gagtcaagag ggaggattga atggtggggg tcttcagtga gcctagactt gggactctga
     1861 tgagtgacat cagagggatg tgaggttggc tgtgtgaagc agtacctgtc gctgagagac
     1921 agacttggat cactgacaag cattactgaa agcatgggtt attcccctcc tcctcagtac
     1981 ccacgctccg ccttccttct cttgtttaga ctaatcttta aaagtgatgt aacttaaaac
     2041 agtccagtgt gagttaatct tcagggccag ctagtatcct gggagtcgag gtgactaaga
     2101 tcttttacct acagattaga gtaatgacaa gatcaaacac tggggtttcc tgccggcagg
     2161 tatatgggag cagtgtaaaa ggcaggctaa cggaatgggc ttttcccctt cctcttcagg
     2221 ccttgtcgag gaccatggct gaacaacttc ttcctcaggc tttgtatttg agcaatatga
     2281 ggaaagcggt gaagatacga gagagaaccc cagaagacat tttcaagcct agcaatggga
     2341 tcatccacca ttttaaaacc atgcaccggt acacactgga gatgttcaga acgtgtcagt
     2401 tttgcccaca gtttcgagag atcatccaca aagcacttat tgacagaagc gtccaggctt
     2461 ctctggaaag ccaaaagaag ctcaactggt gtcgtgaagt caggaagctc gtggctctga
     2521 aaaccaacgg tgatggaaac tgcctcatgc atgcagcctg tcagtatatg tggggtgtcc
     2581 aggatactga cttggtcctg aggaaggccc tctgcagcac ccttaaggag acagacactc
     2641 ggaattttaa gttccgctgg cagctggagt cgctgaaatc tcaggaattt gtggagacgg
     2701 gactttgcta cgacactcgg aactggaatg acgaatggga caacttggtc aaaatggcct
     2761 cagcagacac accagcagcc cggagtggac ttcagtacaa ttctctggaa gaaatccaca
     2821 tatttgtcct cagcaacatc ctcagaagac ccatcattgt catctcagac aaaatgctaa
     2881 gaagtttgga atcaggttcc aattttgctc ctttgaaagt gggtgggatc tacctgcctc
     2941 tccactggcc tgcgcaggaa tgttacagat atcccatcgt ccttggctac gacagtcagc
     3001 actttgtacc cctggtgacc ctgaaggaca gtggccctga aattcgagct gttccacttg
     3061 ttaacagaga gcggggtagg tttgaagact tgaaggttca ctttttgaca gaccctgaac
     3121 atgagatgaa ggaaaagctt ctcaaggagt acttgatggt gctggagatc ccggtgcaag
     3181 gctgggacca cggcacgact cacctgatca atgctgccaa gttagatgaa gctaatctac
     3241 ccaaagaaat aaatctggta gacgactact tcgagcttgt tcagcacgaa tacaagaagt
     3301 ggcaagaaaa cggcgatcag ggcaggagag gggcgcatgc gcagaaccct ttggaggctt
     3361 ccacacccca gctatcactc atggatataa aatgtgagac gcccaactgt cctttcttca
     3421 tgtccgtcaa cactcagcct ttatgccacg agtgctccga gaggcgtcaa aagaaccaga
     3481 gcaaactccc aaagctgaac tcgaagctgg gccctgaggg aggactccca gcggtgggac
     3541 ttggctcctc gaactggaac cccgaggaaa cagctggagg cccccattcg gccccaccca
     3601 cggcccccag ccttttcctg ttcagtgaga ccactgcaat gaagtgcagg agccccgggt
     3661 gccctttcac gctgaacgtg caacacaacg gattctgtga gcgttgtcac aatgcgcggc
     3721 agatgagcgc cagccacacc gcagaccccg gtaagtgcca agcctgcctt caggatgtca
     3781 ctcggacgtt taacggcatc tgtagtacct gtttcaaaag gactacggca gagcccacct
     3841 ccagcctcac ttccagtgtc cctccctcct gtcaccagcg ctccaagtct gacccctcac
     3901 aactcatcca aagtctcacc ccacactctt gccaccgaac tggaaatgcc gtcccctctg
     3961 gctacctttc ccagacatca cggactccag cagacagaac tgggacaagc aagtgcagaa
     4021 aagctggctg catgtatttt gggactccgg aaaacaaggg cttttgcacg ctatgtttca
     4081 tcgaatacag agaaaataaa cagtctgtca ccgcctctgg gaaagccgct tcctcggccc
     4141 ccagattcca gaacaacatc ccgtgcctgg gcagggagtg tggcaccctg ggaagcacca
     4201 tgtttgaagg gtactgtcag aagtgtttca ttgaagctca gaaccagaga tttcatgaag
     4261 ccaaaaggcc tgaagaacaa ctgagatcaa gccagcgtag agaaatgcct cgaaccacac
     4321 agggagcctc aaggccgaag tgtgcccggg cctcttgcaa gaacatcctg gcttgtcgca
     4381 gtgaggaact ctgtatggag tgccagcacc taagccagcg aatagcttct ttggcccacc
     4441 ggggtgagcc cactcctgaa gagcccccta agcagcgctg ccgggcccct gcttgcgatc
     4501 actttggcaa tgccaagtgt aatggttact gcaatgagtg ctaccagttc aagcagatgt
     4561 acggctaagt gcggacacat tgattggtcc cggaagaagg gggcctcaaa ctgccagcca
     4621 gagtggtgct gtcgtccaga cccctgagtg ccacgggaag ggtgggccct gggacagtgg
     4681 cttcaagtgt ctttgagcaa agtagaccag ataagctctt ccctcatcat ggccatggcc
     4741 gtccggttgg taaccaagac tgtgtcctgg tgggctgaga gtagacctgg ttaccggcag
     4801 tgcatgaggt cgggttcagt ctgaagctgt cgctgctcca cctaccagga ggctggggag
     4861 atcttcaatg caagcgaaga ctggcagcgg ttcctgagcc tggctgccag gaaacaggaa
     4921 gaaaggaagg tgggctggcg actgggacta tcctgctgtc ccctggaagc ttttctcgga
     4981 gagccaaagc taaattccag agcaccgagg ccctcctccg caagatgcta ggggaagctc
     5041 agggaaaacg gacatcggca gagcgcatct gtggccactg ggcttcccta cctgccaaca
     5101 tggctcccaa ggttctgcag gaaaacagag ccacacacag actgtgatcc tgaggctgct
     5161 gctgaaatga gacatgtgca catggagaca caacgagctg ctcttgactg tatgcacctt
     5221 ctagacagta gaccgtctta gtgggaagac aaaccagcgt tggtcattgt tgtcctccag
     5281 tccgaagaga gtagtttgga ctgaggtgtg tatcagagtg tgtacaaatg taatataccc
     5341 ttatattatg tatgagggat ttttaagaca ttgaaatggt gccctagagg tagactgaat
     5401 aataataacc tattttctgg ttgttgtcag gttgcccctg acagcttgtt atgtgaattc
     5461 aacaagctgc cttcttaaag ggagccttca ttctgcctta tttattttga acttcagaat
     5521 tatttaaatg aagagtccct tccacagtat tctcttgaaa taacatattt gcttttcacc
     5581 atgtcccggg aacccggcga gttcctggcc ccagagtgtg gtggggtgat tgtcttctct
     5641 ctacttgttg cctccctagg aaagaagggg ttgctttctg aacaaagcct gtagaatctg
     5701 atgcttctta tgactccctg gctgcacaag aagaaaacgt tctgtcttcc atagatgttt
     5761 ctaagtatcc tacctctttg aagaaaaata ggaatggagt gaggtgacag tgggacagga
     5821 cacagaaata tgtgtccttt cacgaccttt gcttactatg taaatgctgt gccccttggg
     5881 taccggatcg gaacattgag atagcaaagc cagtagccat gaggatgagg aggtttctgc
     5941 cattggctcg cagcttctct gtgtgctttg gacttgcgca ggagggaaat gcagctgtgc
     6001 aggggtcaag gctgacatct ggggtctggc ccagcacctg acgatacttg tgatgtcgag
     6061 ctctacctag ccttttctct tcatatctgc tgcgtgtcct tccctgacgt acatctttgt
     6121 ccttcttccc caaagatgtc aaatacaatg catcttcatc tagttctttc agagttaata
     6181 gcctattatt ttgtgtttat ttgatatttt cattgttaat gtgaaatcat gaaattattt
     6241 atacttatta tagaaagtat gtgaaatttg cacagttgtc tttcaaagta tggggtctac
     6301 ctttttcgga cttcagatta ccttgaactg taacttcaca aaagtcaata ttaaaagaat
     6361 aaattattta agaacaaa
//
