LOCUS       NM_001137633            3797 bp    mRNA    linear   ROD 16-OCT-2024
DEFINITION  Rattus norvegicus TNF alpha induced protein 2 (Tnfaip2), transcript
            variant 1, mRNA.
ACCESSION   NM_001137633 XM_001071736 XM_216791
VERSION     NM_001137633.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3797)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474034.2.
            
            On or before Nov 14, 2008 this sequence version replaced
            XM_001071736.1, XM_216791.4.
            
            ##Evidence-Data-START##
            CDS exon combination :: FQ212109.1 [ECO:0000331]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3797
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q32"
     gene            1..3797
                     /gene="Tnfaip2"
                     /note="TNF alpha induced protein 2"
                     /db_xref="GeneID:299339"
                     /db_xref="RGD:1594556"
     exon            1..215
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            216..264
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            265..619
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     CDS             280..2355
                     /gene="Tnfaip2"
                     /note="isoform 1 is encoded by transcript variant 1; tumor
                     necrosis factor, alpha-induced protein 2"
                     /codon_start=1
                     /product="tumor necrosis factor alpha-induced protein 2
                     isoform 1"
                     /protein_id="NP_001131105.1"
                     /db_xref="GeneID:299339"
                     /db_xref="RGD:1594556"
                     /translation="MLKMVTFFQGLPGQQSVPGTLDLPGSPQKPRSTSEAESETSMSE
                     ASSEDLMPSQEAPEGEEESAKKKEKKSKGLANMFSVFTKGKKKKKDQPRLSDPEVQSK
                     SRPEEDGPLPTVEELKEALELGRLEVAWQVLALERQLEAAAAAGGTSDEELVWRQSKV
                     EALYVLLRDQVLRVLRRPLEAAPERLSQALAVVSQEELEDRRASRGPLATALAITRPR
                     RWLQLWRGVVAEVAAERLDAQPAFVPEGRSEAENRFLHMGRTMREDMEVVVERLKPLF
                     PEEFNVVHTYAESYHEHFATHLCTLAQFELCERDTYLLLLWVQNFYPNDILNSPKLAQ
                     ELQGIRLGSLLPPKQIRLLEAVFLSNEVTNVKQLMTRALELESQRWAQDVAPQSLDGR
                     RHSELAIDILQIISQGQTKAENITSDVGMQIKQLLLVELAALLRSYQRVFDEFLEKSK
                     LLRNYRVNIIANINNCLSFRTSVEQRWQIPQDSLNRLVEPLKDLKAHGFDTLLQSLFS
                     DLKPLFKKFTQTRWAKPVETLEEIITTVSVSLPEFSELQDCFREELMEAVHLHLVKEY
                     IIRLSKRRLVLKTAEQQQQLAKHILANADTIQHFCTENGSTATWLHAALPTISEIIRL
                     QDPSAIKIEVATYATWYPDFSKGHLNAILAIKGNLPSSEVRSIRNILDINTGVQELSR
                     PLFSLIKVA"
     exon            620..1250
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1365
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1366..1488
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1489..1589
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1590..1688
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1689..1812
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1813..1935
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..2091
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            2092..2213
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
     exon            2214..3797
                     /gene="Tnfaip2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cactctttcc aggcctttgg gaacagcaaa ttgactccgc ccctctccta caggcccggc
       61 cccgccccca gcactggaat cggccgggcc taggcgtccg ccagcggatt ttccgcggtt
      121 gcggctgttg gagcaggcgg agcctgggcg gagcctgcga ctattttagg cgggtccctg
      181 cagggccggg actaaggcgt cctgtcctgg acacatggct gtgtgaccgc aggaagacct
      241 atgcttttgc tcacatgtaa aaaggcctga gccagggtga tgctgaagat ggtgactttc
      301 ttccaagggc ttcctggcca gcagtctgtg ccagggaccc tggacctccc tggaagcccc
      361 caaaagccac gttccacatc cgaggcagaa tcagagacct ccatgtctga ggcttcctct
      421 gaggacctga tgccatctca ggaggctcct gaaggggagg aggagtctgc gaagaagaag
      481 gagaagaaat ccaaaggact ggccaatatg ttcagtgtct tcaccaaagg gaagaagaaa
      541 aaaaaggacc agcccagatt atcggatccg gaggtgcagt ccaagtccag gccggaggaa
      601 gatggtccac tgcccacagt ggaggagctc aaagaggccc tggagctcgg gcggctggag
      661 gtggcgtggc aggtgctggc tttggagcgg cagctcgagg ctgctgcggc ggcaggtggc
      721 acgagcgacg aggagctggt gtggcggcag agcaaggtgg aggcgctgta tgtactgctg
      781 cgcgaccagg tgctccgggt gctgcggcgg ccgctggagg cggcaccgga gcggctgagc
      841 caggcgctgg cagtggtgtc gcaggaggag ttggaagacc gccgggcgtc ccggggacct
      901 ttggcaacgg cactagcaat cacacgcccg cggcgatggc tgcagctgtg gaggggcgtc
      961 gtggcggagg tagcagccga gcgtctggac gcgcagcccg cctttgtgcc cgagggccgc
     1021 tccgaggccg agaacaggtt cctgcacatg ggccgcacca tgagggagga catggaggtg
     1081 gtggtggagc ggctgaaacc gctgttcccc gaagagttca acgttgtgca cacttacgca
     1141 gagagctacc acgaacactt cgccacccac ctgtgcacct tggcgcagtt cgagctatgt
     1201 gaaagggaca cctacttgct gctcctctgg gtgcagaact tctaccccaa tgatattctg
     1261 aacagcccta agttggcaca ggagctccag ggtatcaggc ttgggagcct cctgccccca
     1321 aagcagatcc gactgctgga ggccgtgttc ctgtccaatg aggtgaccaa tgtgaagcag
     1381 ctcatgaccc gggctttgga gctagagtct cagcgctggg cccaggatgt ggctccccag
     1441 agcctggatg gccgccgtca cagtgaactg gccatcgaca ttctccagat catttcacaa
     1501 ggccagacca aggctgagaa catcacttcc gatgtgggga tgcagattaa gcagttgcta
     1561 ctggtggagc tggctgcgct actgaggagc taccagcgtg tctttgatga gtttctagag
     1621 aaaagcaaac tgctgagaaa ttatagagtc aacatcatcg ccaacatcaa caactgcctg
     1681 tccttccgga cttctgtgga acagaggtgg cagatacctc aggattctct gaatcgtctg
     1741 gtggagcctt tgaaagacct caaggctcac ggcttcgaca ccctgctcca gagcctattt
     1801 tcagacctga agccactgtt taagaagttc acacagaccc gctgggcaaa gccagttgag
     1861 accctggagg aaatcatcac tactgtgagc gtcagcctgc ccgaattctc agagctgcag
     1921 gactgtttcc gggaggagct catggaggca gtgcacctgc acctggtaaa ggaatacatc
     1981 atccggctca gcaaacggcg cctggtcctc aagaccgcag agcagcagca gcagctggca
     2041 aagcacatcc tcgccaatgc ggacaccatt cagcacttct gcactgagaa tggctccact
     2101 gcaacctggc tgcacgctgc cctccctacg atctctgaga ttattcgcct gcaagatccc
     2161 agtgccatca agatcgaggt ggccacatat gccacttggt accccgactt cagcaaaggc
     2221 cacctgaacg ccatcctggc catcaagggc aatctaccaa gcagtgaagt caggagcatc
     2281 cggaacatac tggacatcaa cacaggagtg caggagctat ccaggcccct gttctcactt
     2341 ataaaagttg cttagctttt ccaaaggtct gataatgcta atgagaccca gggaacatca
     2401 ggcaccactc cagctgggga tgcttaatgg ccccagctcc gtgacccatc accaggctcc
     2461 cacattctgc tgctgcttct gcccagccct ggctctggaa caagatctgg cagccatgat
     2521 tggacagatg ttggtccagt ggggtccaga ccccactaaa gggagttgac gtgtgagcat
     2581 gtgagagatt tcttgccagt gattatttgt cttgggtaga gcgacctttg ccttcctaca
     2641 ctgtagtctg ccttttaacg gcctgagtag ccccatccag ctccctaggg ccaggggcaa
     2701 agcctcactt atcccattcc cttcagccca gggctgccat gggagagaac tgagatcaag
     2761 ggaagacgga agagatggta tcctggaagg aggcttgtga agtgacaatg acagagctag
     2821 accctgccaa gtggctcctg gtaccactca gctaggacga ctctcctatt cacttcccat
     2881 gggctgcccc tctgtgtgta tgtgtgtggg gagtgacccc ggaagccttg gcagagcagg
     2941 gacctcctgg gttctctcag attaaatctt ctcccatcta ggaataagcc aaagggctgc
     3001 ctttgtgggg cccaccgtct gaagtctggt ggggatgcag ggatctggcc agggctttat
     3061 tagcttcccg ttggtactgc actacgttcc cgcaccaagt gggtttgaac tacaactttt
     3121 ccttcagttc tgcaaatcag aagtctgata taggactgaa atctaaatgt ggtcagggcc
     3181 cactgtttct cgaagcccca gggagagtca tttcctggtc tttcccagtc ttgagaggtc
     3241 gcccactttt gtttttggtc tgaggtcctt ctgccttcag agccagggac aggctacata
     3301 tgtccctcgt gccaccagtc tccactggtt cggatcccac tgtgactgca gtgaatctgc
     3361 ctggagattc agcagcagcc tcgatttggg ccgttaactc ctgtcaccca gtagtcattg
     3421 gccataggga ccagagtatc ccgaggggtc tatcctggaa aacaggaaca cggtttgcca
     3481 gcaaggcacc tgctacacca cagaccctgc tcccgtccag ccatgaaagc cctgctcagc
     3541 cctgacccag gcttgcttcc tcatggttcg aggctgggat ctgaagtctc tcctctgtcc
     3601 cctttcccag gtacttgctt taccgagctg gccagggcaa gcaatgcaca cagcctttgt
     3661 atgcttgtag atgttaactt gtcgatgaca ttaatattgt gaattatttt tatagtgttg
     3721 attttgtatg catgtactca ggacagaatc cagatatata tatatatagc ttgatataaa
     3781 acatttcata agtggct
//
