LOCUS       XM_008763756            7339 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tenascin C (Tnc), transcript variant
            X3, mRNA.
ACCESSION   XM_008763756
VERSION     XM_008763756.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008763756.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008763756.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7339
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7339
                     /gene="Tnc"
                     /note="tenascin C; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 53 ESTs, 2 long
                     SRA reads, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 41 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:116640"
                     /db_xref="RGD:621057"
     CDS             364..6696
                     /gene="Tnc"
                     /codon_start=1
                     /product="tenascin isoform X3"
                     /protein_id="XP_008761978.1"
                     /db_xref="GeneID:116640"
                     /db_xref="RGD:621057"
                     /translation="MGAVTWLLPGIFLALFALTPEGGVLKKVIRHKRESGLNLTLPEE
                     NQPVVFNHIYNIKLPMGSQCSVDLESTSGEKDLSPTPESSGSFQEHTVDGENQIVFTH
                     RINIPRRACGCAAAPDVKELLSRLEELEMLVSSLREQCTMGTGCCLQPAEGRLDSRPF
                     CSGRGNFSAEGCGCVCEPGWKGPNCSEPECPGNCNLRGQCLDGQCICDQGFTGEDCSQ
                     LACPNDCNDQGKCVNGVCVCFEGYAGLDCGLEVCPVPCSEEHGMCVDGRCVCKDGFAG
                     EDCNEPLCFNNCNNRGRCVENECVCDEGFTGEDCSELICPNDCFDRGRCINGTCYCEE
                     GFTGEDCGELTCPNNCQGHGQCEEGQCVCNEGFAGADCSEKRCPADCHHHGRCLNGQC
                     ECDDGFTGADCGELQCPNGCSGHGRCVNGQCVCDEGYTGEDCSQRRCPNDCHNRGHCV
                     QGKCICEQGFKGFDCSEMSCPNDCHQHGRCVNGMCICDDDYTGEDCRDRRCPRDCSQR
                     GRCVDGQCICEDGFTGSDCAELSCPGDCHGHGRCVNGQCICHEGFTGKDCKEQRCPSD
                     CHGQGRCEDGQCICHEGFTGLDCGQRSCPNDCSNQGQCVAGRCICNEGYTGVDCSEVS
                     PPKDLIVTEVTEETVNLAWDNEMRVTEYLIMYTPTHADGLEMQFRVPGDQTSTTIREL
                     EPGVEYFIHVFAILENKRSIPVSARVATYLPAPEGLKFKSIKETSVEVEWDPLDIAFE
                     TWEIIFRNMNKEDEGEITKSLRRPETSYRQTGLAPGQEYEISLHIVKNNTRGPGLKKV
                     TTTRLDAPSQIEVRDITDTTALITWSKPLAEIDSIELSYGIKDVPGDRTTIDLTHEDN
                     QYSIGNLKPDTEYEVSLISRRVDMASNPAKETFITGLDAPRNLRRVSQTDNSITLEWR
                     NVKADIDSYRIKYAPISGGDHAEIDVPKSQQATTKTTLTGLRPGTEYGVGVSAVKGDK
                     EGDPATINAATEIDAPRDLQVSETTQDSLTLFWKTPLAKFDRYRLNYSLPTGQSIEIQ
                     LPKDATSHVLTDLEPGQEYTVLLTAEKGRHKSKPARVKASTEEVPSLENLTVTEAGWD
                     GLRLNWTADDLAYEYFVIQVQEANKVETAHNFTVLGNLRTADIPGLKAATPYRVSIYG
                     VARGYKTPVLSAETFTGKTPSLGEVTVAEVGWDALKLNWTAPEGAYTNFFIQVLEADM
                     TQTVQNLTVPGGLRSVDLPGLKAATRYYITVRGVTQDFSTAPLSVEVLTEEIPQLGGL
                     SVTEVSWDSLTLNWTTDDLAYKHFIIQVQEANNVEAAQNLTVSGSLRVVDIPGLKADT
                     PYRVSIYGVIQGYRTPMLSADVSTAKEPEIGNLNISDVTPESFNLSWTATDGIFDMFT
                     IEIIDSNRLLQTAEHNISGAERTAHISGLPPSTDFIVYLSGIAPSIRTKTISTTATTE
                     ALPLLENLTISDTNPYGFTVSWTASENAFDSFLVTVVDSGKLLDPQEFTLSGTQRKLE
                     LRGLITGIGYEVLVSGFTQGHQTKPLRAETITEAEPEVDNLLVSDATPDGFRLSWTAD
                     EGIFDSFVIRIRDTKKQSEPQEITLPSPDRTRDITGLREATEYEIELYGISRGRRSQP
                     VSAIATTAMGSPKEIMFSDITENAATVSWRAPTAQVESFRITYVPVTGGPPSMVTVDG
                     TDTETRLVRLTPGVEYHVSVIAMKGFEESDPVSGSLITALDGPSGLLTANITDSEALA
                     MWQPAIATVDSYVISYTGERVPEITRTVSGNTVEFELHDLEPATEYTLSVFAEKGHQK
                     SSTIATKFTTDLDSPRELTATEVQSETALLTWRPPRASVTGYLLVYESVDGTVKEVIV
                     GPDTTSYSLADLSPSTHYTARIQALSGSLRSKLIQTIFTTIGLLYPFPRDCSQAMLNG
                     DTTSGLYTIYINGDKTQALEVYCDMTSDGGGWIVFLRRKNGREDFYRNWKAYAAGFGD
                     RREEFWLGLDNLSKITAQGQYELRVDLQDHGESAYAVYDRFSVGDAKSRYKLKVEGYS
                     GTAGDSMNYHNGRSFSTYDKDTDSAITNCALSYKGAFWYKNCHRVNLMGRYGDNNHSQ
                     GVNWFHWKGHEYSIQFAEMKLRPSNFRNLEGRRKRA"
ORIGIN      
        1 ggcgaggcgt cccattacag aggaaggagc tccctatata agccagccaa agctggctgc
       61 tccagccaca gcctgcctac tgtcacgcgt ctctcccgcg cgctgaacac acaccctagc
      121 ctctggtggg cacagacagt ggctggggag acgctaggga ctgcgcgctt gggaactcgc
      181 ccaggtactt ctctgagccg gtgcacccag agaccttgat ttctccgacc tggaatagat
      241 ctttcttcca tgaagactgg agacgttcaa ctgtattctt ttaagtacat ctaaatacca
      301 aattctactg gaagttcagg caccctacag atctagagac acctagccaa tccaacctct
      361 accatggggg ccgtgacctg gctattgcca ggcatcttcc tagctttgtt tgccctcact
      421 cctgaaggtg gggtcctcaa gaaagtcatc aggcacaagc gagagagtgg gctgaacttg
      481 accttgccag aggagaatca gccagtggtg ttcaaccata tctacaacat caagttgccc
      541 atgggttctc agtgctcagt ggatctagag tcaacgagtg gagagaaaga cctgagcccc
      601 acaccagagt ccagtggaag cttccaggag catacagtgg atggggaaaa tcagattgtg
      661 ttcacacacc gcatcaacat ccctcgtcgg gcctgtggct gtgccgcagc tccagatgtg
      721 aaggagctcc tgagcagact ggaggaactg gagatgttgg tatcttctct aagggagcag
      781 tgcaccatgg gtacaggctg ttgcctccaa cctgcagaag gccgtctgga cagcaggccc
      841 ttctgcagcg gcaggggtaa cttcagtgct gaaggttgtg gctgtgtctg tgaaccaggc
      901 tggaaaggtc ccaactgctc tgagcctgaa tgccctggaa actgtaatct cagaggccag
      961 tgccttgatg gacagtgtat ctgtgaccag ggtttcactg gggaagactg cagccagcta
     1021 gcctgtccca atgactgcaa tgaccagggc aagtgtgtga atggggtctg tgtgtgcttc
     1081 gaaggctatg ccggccttga ctgtggcctg gaagtctgcc cagtgccgtg cagcgaggaa
     1141 cacgggatgt gtgtggatgg caggtgtgtg tgcaaagatg gctttgctgg tgaagactgc
     1201 aatgagcccc tttgcttcaa caactgcaac aaccgtgggc ggtgtgtgga gaacgaatgc
     1261 gtctgtgatg agggcttcac gggcgaagac tgcagcgagc tcatttgccc caatgactgc
     1321 ttcgaccgag gtcgctgcat caacggcacc tgctactgtg aagaaggttt cacaggtgaa
     1381 gactgtggtg agctcacctg ccccaacaac tgtcagggcc atggccagtg tgaagaggga
     1441 cagtgtgttt gcaacgaggg ctttgcaggg gcagactgca gtgaaaagcg gtgtcccgca
     1501 gactgtcacc accatggccg ctgtctcaac ggacagtgtg agtgtgacga tgggttcaca
     1561 ggggctgact gtggggaact ccagtgcccc aatggctgca gtgggcatgg ccgctgtgtc
     1621 aatgggcagt gtgtgtgtga cgagggctac accggagaag actgtagcca acggcgatgc
     1681 cccaatgact gccacaaccg gggtcactgt gtacagggca aatgcatatg tgagcaaggc
     1741 ttcaaaggct ttgactgtag tgagatgagc tgtcccaatg actgccacca gcatggccgc
     1801 tgtgtgaatg gcatgtgcat ctgtgatgat gactacactg gggaagactg cagagaccgc
     1861 cgctgtcccc gggactgtag ccagaggggg cgctgtgtgg acggacagtg catttgtgag
     1921 gatggtttca ctggttctga ctgtgctgag ctctcctgcc ctggtgactg ccacggccat
     1981 ggccgctgtg tgaatggcca atgcatctgc cacgagggct tcaccggcaa agactgcaaa
     2041 gagcaaaggt gccccagtga ctgccacggc caaggccgct gtgaggacgg ccaatgtatc
     2101 tgtcatgagg gcttcacagg cctggactgt gggcagcgct cctgtcccaa tgactgcagc
     2161 aaccagggac aatgtgtggc aggccgctgc atctgcaatg aaggctacac aggggtagac
     2221 tgctctgagg tgtcccctcc caaagacctt attgtgacag aagtaacaga ggagactgta
     2281 aatctggcat gggacaatga gatgcgggtc actgagtacc tcattatgta cacacccacc
     2341 catgctgatg gcctggagat gcagttccgt gtgcctgggg accagacatc taccaccatc
     2401 cgggagctgg agccaggagt ggagtacttc attcatgtgt tcgccatctt ggagaacaag
     2461 aggagcatcc ctgtcagtgc cagagttgcc acctacttgc ctgcacctga aggcctaaaa
     2521 ttcaagtcta tcaaggagac atctgtggaa gtagagtggg atcctctgga catcgctttt
     2581 gaaacgtggg agatcatttt cagaaatatg aacaaagaag atgagggaga gatcacaaaa
     2641 agcttgagga ggccagagac ctcctaccgc caaactggcc tggctcctgg ccaagaatat
     2701 gaaatatctc ttcacattgt gaaaaacaac acccgaggcc ctggcttgaa gaaagtgacc
     2761 acaactcgcc tggatgcccc cagccaaatt gaggtgagag acatcacaga cactacagca
     2821 ctgatcacct ggtccaagcc cttggctgaa attgatagca ttgagctctc ctatggcatc
     2881 aaggatgtgc ctggagaccg gaccaccatc gacctcacac atgaagacaa ccagtactcc
     2941 atcgggaacc tgaaacctga cacggagtat gaggtgtccc tcatctcccg cagagtggac
     3001 atggcaagca accctgccaa ggagaccttc atcacaggcc tggatgctcc caggaatctc
     3061 cgtcgcgtct cacagacaga caacagcatc accttggagt ggaggaatgt caaggcagac
     3121 attgatagtt atagaattaa gtatgcacct atctctggag gtgaccatgc tgagatagat
     3181 gttccaaaga gccagcaagc cacaaccaaa accacactca caggtctaag gccaggaact
     3241 gaatatggag tgggcgtctc tgctgttaag ggagacaagg agggcgatcc agcaaccatc
     3301 aatgcagcca cagaaattga tgcacccagg gacttacagg tgtctgagac cacacaagac
     3361 agtctgactt tattctggaa gacacctctg gccaagtttg atcgttaccg cctcaactac
     3421 agcctcccca caggccagtc aatagagatt cagctgccaa aggatgccac ctcccatgtc
     3481 ctgacagacc tggagccagg gcaagaatac actgttctcc tcaccgctga gaagggcaga
     3541 cataagagca agcctgcgcg tgtgaaggca tccacagaag aagtaccttc tctggaaaat
     3601 ctcaccgtga ccgaggccgg ctgggatggc ctcagactca actggactgc agatgacctg
     3661 gcctatgagt actttgttat tcaggtacag gaagccaaca aggtggagac tgctcacaac
     3721 ttcacagtac ttggtaacct ccggactgca gacatcccgg gcctcaaggc tgccactcct
     3781 tatagagtct ccatttatgg ggtagctcgg ggctataaaa cacccgtgct ctctgctgag
     3841 accttcacag ggaaaactcc cagtttggga gaggtgactg tggctgaggt gggctgggat
     3901 gccctcaagc tcaactggac tgctccagaa ggagcctata cgaacttttt cattcaggtg
     3961 ctagaggctg acatgaccca gactgtccag aacctcacag tcccaggggg actgaggtca
     4021 gtggacctac ctgggctcaa agcagccacc cgctattaca tcaccgttcg aggggtcacc
     4081 caggacttca gcacagcccc tctctctgtt gaggtcttga cagaggagat ccctcaactg
     4141 ggaggcttgt ccgtgactga ggtcagctgg gacagcctta cactcaactg gaccacagat
     4201 gatctggcct ataaacactt tatcattcag gtgcaggagg ccaacaatgt agaggctgct
     4261 cagaacctca cagtatctgg tagcctcaga gttgtggaca tcccaggcct caaggctgat
     4321 accccttata gagtctccat ctatggggtg atccagggct atagaacacc aatgctctct
     4381 gctgatgtct ccacagccaa agaacctgaa attggaaact taaatatttc tgatgtaact
     4441 cctgagagct tcaatctctc ctggacagct accgacggga tcttcgacat gtttactatc
     4501 gaaattattg attctaatag gttgctgcag acagcagaac ataatatatc tggtgctgaa
     4561 cgaactgccc acatctcggg ccttccacct agtactgatt tcattgtcta cctctctgga
     4621 attgctccca gcatccgtac caaaaccatc agtaccacag ccaccacaga ggccttgccc
     4681 cttctggaaa atttaaccat ttccgacact aatccctacg ggttcacagt ttcctggacg
     4741 gcatcggaga atgcctttga cagctttcta gtaacggtgg tggattctgg gaagctgctg
     4801 gacccccagg aattcacact ttcaggaacc cagaggaagc tggagcttag aggcctcata
     4861 actggcattg gctatgaggt cctggtctcc ggcttcaccc aagggcacca aacaaagccc
     4921 ttgagggctg agaccattac agaagctgaa ccggaagttg acaaccttct agtttcagat
     4981 gctactccag acggtttccg tctgtcctgg actgctgatg aagggatatt cgacagtttt
     5041 gttatcagga tcagagatac caaaaagcaa tctgaaccac aagaaataac cctcccttcc
     5101 cccgaccgta ccagggacat aacaggtctc agagaggcca ctgagtacga aattgaactc
     5161 tatggaataa gccgtggaag gcgatcccag ccagtcagtg ccatagcaac aacagccatg
     5221 ggttctccga aggaaatcat gttctcagac atcactgaaa atgcagccac agtcagctgg
     5281 agagcaccga ctgctcaagt ggagagtttc cggattactt atgtgcctgt aacaggaggt
     5341 cccccatcca tggtgaccgt ggatgggacg gatactgaga cccgactggt gaggctcacc
     5401 cctggagtgg agtaccacgt cagtgtgatt gccatgaagg gatttgaaga aagtgatccg
     5461 gtctcggggt ctctaatcac agctctcgat ggtccatctg gccttctgac agccaacatc
     5521 acagactcag aagccttggc catgtggcag ccagccattg ccactgtaga cagttatgtc
     5581 atctcctaca caggggagag agtgccagaa attacccgca cagtgtctgg gaatacagtg
     5641 gagtttgaac tacatgacct ggagcctgcc acagagtaca cactgagtgt ctttgcagag
     5701 aaaggtcacc agaagagttc taccatcgct acgaaattta ccacagacct ggattcccca
     5761 agagaattga ctgctactga ggttcagtca gaaactgccc tcctcacctg gagacctccc
     5821 cgggcatcgg tcactggata cctcctggtc tatgagtctg tggatggtac agtcaaggaa
     5881 gtcattgtgg ggcctgacac cacctcctac agcctggcag acctgagccc atccacccac
     5941 tacacagcaa gaatccaggc attgagtggg tccctgagga gcaaactgat ccaaaccatc
     6001 ttcaccacaa ttggactcct atatccattc cctagggatt gctctcaagc aatgttgaat
     6061 ggcgacacca cctctggcct ctataccatc tatataaatg gtgacaagac tcaagcactg
     6121 gaagtctact gtgatatgac ctctgatgga ggtggatgga tcgttttcct gagacgcaaa
     6181 aatggacgtg aggacttcta tcgaaactgg aaggcctatg ccgctgggtt tggagaccgc
     6241 agagaagaat tctggcttgg actggataac ctgagcaaaa tcacagccca agggcaatat
     6301 gagctccggg tggacctaca agaccatggg gagtcagcct atgctgtgta tgacaggttc
     6361 agtgttggag atgccaagag tcgctacaag ctgaaggtag aaggatacag tggaacggca
     6421 ggtgactcca tgaactatca caatggtaga tccttctcta cctatgacaa ggacacagac
     6481 tcagccatca ccaactgtgc cctgtcctac aaaggagctt tctggtataa gaactgtcat
     6541 cgtgtcaacc tgatgggcag atatggggac aataatcaca gtcagggtgt taactggttc
     6601 cactggaagg gccatgagta ctcaatccag tttgcggaga tgaaactaag acccagcaac
     6661 ttccgaaatc tggaaggcag gcgtaagcgg gcataaatcc cagggacaat ttggtgagag
     6721 aggaatgggg cccagagaaa acaggatttt taccaaagca tcaatacaac cagtccaacg
     6781 gtgaagctat ccttgggcat ttgatgggca tccaagcaga ccatggatca ctgaggcact
     6841 gacgtaggcc cctctgcaat tacttccttt gcaccaaaga caacagtctg caactagttt
     6901 ctgctttttt gtttgattga gcaaagtctc ctagcgacag caacaccgtg atttttactt
     6961 ctactgggtg gttctgggaa tgggagaggg gcgagctggc tatccagcgg acatagtcat
     7021 tttcagagcc agctatattc tacacaaagc tgttcaattg ttattggttg ggtcgcaaag
     7081 ataaaacata cgtcattgga ggttacccct tgccctgcgc cccactgatg ttttgtacat
     7141 ttcctacaac tgaagccaga aaaatgatat tgtttaaatt tcaaggacat taatattatt
     7201 aatataataa tggtgatggt gatgatgatg ttgaaaactg aggactttta aagagacatt
     7261 cccttcccaa atgtgtctgg acagtacctg attgtatttt tttgttgttg ttttttaata
     7321 aaaagcacag tacttttca
//
