LOCUS       XM_039102047            1262 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tropomodulin 4 (Tmod4), transcript
            variant X1, mRNA.
ACCESSION   XM_039102047
VERSION     XM_039102047.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102047.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1262
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1262
                     /gene="Tmod4"
                     /note="tropomodulin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 17 ESTs, 14
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:295261"
                     /db_xref="RGD:1308940"
     CDS             128..1165
                     /gene="Tmod4"
                     /codon_start=1
                     /product="tropomodulin-4 isoform X1"
                     /protein_id="XP_038957975.1"
                     /db_xref="GeneID:295261"
                     /db_xref="RGD:1308940"
                     /translation="MSSYQKELEKYRDIDEDEILRTLSPEELEQLDCELQEMDPENML
                     LPAGLRQRDQTKKSPTGPLDRDALLQYLEQQALEVKERDDLVPFTGEKKGKPFIQPKR
                     EIPAQEQITLEPELEEALSHATDAEMCDIAAILGMYTLMSNKQYYDAICSGEICNTEG
                     ISSVVQPDKYKPVPDEPPNPTNIEEMLKRVRSNDKELEEVNLNNIQDIPIPVLSDLCE
                     AMKTNTYVRSFSLVATKSGDPIANAVADMLRENRSLLSLNIESNFISSTGLMAVLKAV
                     RENATLTELRVDNQRQWPGDAVEMEMATVLEQCPSIVRFGYHFTQQGPRARAANAMTR
                     NNELRRQQKKR"
ORIGIN      
        1 tgagggtgac ataagaggaa ctgggcatgg agccagctgt gctggcaggg cctccagcag
       61 ctgtgtcagg gcaagagccg ttgccgggct gtgagtgtca caccgtgggg agggggtagg
      121 ggccaccatg tcatcctatc agaaggaact ggagaagtac agagacatag atgaagacga
      181 gatcctaagg accttgagcc ctgaggagct agaacagctg gactgtgagc tacaagaaat
      241 ggatcctgag aacatgctgc tgccagctgg actgagacaa cgtgaccaga caaagaagag
      301 tccaacaggg ccactagaca gagacgccct attgcagtac ctggaacaac aggcgctaga
      361 agtcaaagag cgtgacgact tggtgccctt cactggcgag aagaagggaa aaccctttat
      421 tcagcctaag agagaaattc cagcacagga acagatcaca ctggagcctg aactggagga
      481 agcactgtcc catgccacag atgctgaaat gtgtgacatt gcagcgatcc tgggcatgta
      541 cacactgatg agcaacaagc aatactatga tgctatctgc agcggagaga tctgcaacac
      601 cgaaggcatt agcagtgtag tgcagcctga caagtataag ccagtaccag atgaaccccc
      661 aaaccccacc aacattgagg agatgctaaa gagggtgcgg agcaatgaca aagagctgga
      721 ggaggtgaac ctcaataaca tccaggacat cccgataccc gtgctaagcg acttgtgtga
      781 agcaatgaag actaatacct atgtccggag cttcagtctg gtggccacaa agagtggtga
      841 ccccatcgcc aatgcggtgg ctgacatgtt gcgtgagaac cgcagtctcc tgagcctgaa
      901 catcgaatcc aacttcatca gcagcacagg gctcatggct gtgctgaagg cagttcgaga
      961 aaacgctact ctcactgagc tccgagtaga taaccagcgc cagtggcctg gagatgctgt
     1021 agagatggag atggccactg tgctagagca gtgtccgtct attgtccgct tcgggtacca
     1081 cttcacacaa caaggaccgc gagctcgggc agccaacgcc atgacccgca acaatgagct
     1141 gcggcgtcag caaaagaaga gataacatca cccttccttt taccacaaga gatgagagcc
     1201 tgggacacgt agatcctcat ctctctctcc ttccctgtaa ataaaatccc ttttgttcac
     1261 gc
//
