LOCUS       XM_039081147            4034 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tropomodulin 3 (Tmod3), transcript
            variant X1, mRNA.
ACCESSION   XM_039081147
VERSION     XM_039081147.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081147.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4034
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4034
                     /gene="Tmod3"
                     /note="tropomodulin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 mRNAs, 58 ESTs, 5 long
                     SRA reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 61 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:300838"
                     /db_xref="RGD:1311030"
     CDS             1092..1733
                     /gene="Tmod3"
                     /codon_start=1
                     /product="tropomodulin-3 isoform X1"
                     /protein_id="XP_038937075.1"
                     /db_xref="GeneID:300838"
                     /db_xref="RGD:1311030"
                     /translation="MHSLIADTQFCDVLGSSNGDDQEHFPNVVKGEKILPVFDEPPNP
                     TNVEESLKRIRENDACLVEVNLNNIKNIPIPTLKDFAKTLETNTHVKHFSLAATRSND
                     PVAAAFADMLKVNKTLKSLNMESNFITGTGVLALIDALKDNETLSELKIDNQRQQLGT
                     SVELEMAKMLEENTNILKLGYQFTQQGPRTRAANAITKNNDLVRKRRIEGDQQ"
ORIGIN      
        1 taacatgccc tcattaatac aaagtcaatt tggattgacc cagtgtcaga atcagaaaac
       61 ccctggtttt gaattcagat ttaggcagtt acaaaaactg ttattctcac tgtgttaatt
      121 tttctgccat tttaacaaaa gacctgagaa aaacaacttt gatcctttta aagggaaaat
      181 tgcgggctgg tgtggtagca cataccttta gtctcctgta cttgggacat aggaggatct
      241 gagatcaaag ccacccaggg ctacacagtg agactgtcct taaaatgttt atatttgctc
      301 gttgccctgg aagtgtcagt acatagtcag cagctccttt accttggggc ctacagtgaa
      361 gtagaactcc atggtgagag catctgtgga gcagagatgc ttgccacatg gcagccaaga
      421 aggggccaga aatggggtgt ctccccagac ctctctagta acttgcttgt aactagtttc
      481 cttactcacc cccaccccac atcccagggc catcatggcc atcatggatc tcccttggga
      541 ttaggtcaca gccctcatga tccagttact aatagtgact ggattaccaa ctgggagaca
      601 ggactgctgc ctaggaactt tgaggtaagc agagccatga caaccaaaac aacagaatga
      661 accataactg actcgtatta ccagtctggt tagcacagac atcaaactag atgtttctgc
      721 tgagcactag aaatatagct gaacttttaa tcagataacc acagctgtag tattggatac
      781 agtgcagcag tagagacaga cagtctgtct ttagtgctgg gaatggtact cctagtacag
      841 aggaactgga gaggaaaagt ccccaaggct tgcctgtcag ctgggagact ggggaaggca
      901 gcagagctac gacttttccc aggccatcct cctgccattg aatggaaagc agatgaggga
      961 aaatttttat ccccaagcag aagccagtgc agacttttac agaagaaact atatcccttg
     1021 atccagagtt agaagaagcc ttgacaagcg cttcagacac agaactgtgt gaccttgcag
     1081 caattcttgg gatgcacagc ctgattgcag acacacagtt ctgtgacgtg ctgggaagta
     1141 gtaacggtga cgaccaagaa cattttccga atgtggttaa aggggaaaag attcttccag
     1201 tgtttgatga gccaccaaat ccaaccaacg ttgaagagag tttaaagaga attagggaga
     1261 acgatgcctg tcttgttgaa gttaatttga ataatataaa aaatatccca attccaactc
     1321 taaaagattt tgcgaagact ttggaaacca acacacatgt gaagcatttc agtcttgcag
     1381 ccaccaggag caatgacccc gtggctgctg cttttgcaga tatgctgaaa gtgaacaaaa
     1441 ctttgaagag cttaaatatg gagtccaact tcatcacagg cactggggtt ttagcactga
     1501 ttgatgcttt gaaagataat gagaccctat cagagctcaa gattgacaat cagagacagc
     1561 agttgggcac ctctgtagaa ttagaaatgg ccaagatgct cgaggaaaac acaaatatcc
     1621 ttaaacttgg ataccagttc acgcagcagg gaccccgaac cagggcagcc aatgctataa
     1681 caaagaacaa tgacttagtg cgcaagaggc ggattgaggg agaccagcag taagcgtgcc
     1741 cagcgagggg taaccgctag aagactgcag atcacagagg ctcatgcgtg tggcagcaga
     1801 tgtaaacatt tcctgggtgg aagggaaaag actggaaatc tttttttaac tatatacatt
     1861 attttcctag cttacagtat tatatttgat ttgtaaaatc agtagtaggt agtgttttgt
     1921 atttgtatca tttctactga aaccagttta attgaatggt ttgtaatgat ttttaggtaa
     1981 aaatgcagtt gtagaaagtt tcagaagtcg tgtatgtaag aataatttga atgaacatct
     2041 tggggaccaa tcttttaaat caaaagggac gttgctaact caagactaat gttgttcctt
     2101 acacatttat ggtcaggcac atggtggttt cctttttaaa atccatgaat taggcaaacg
     2161 tttacttatt ccttattagg gaaataaaat gttggaatgt taaaagatga ctcagaatcc
     2221 actatatcta cctgcataag ccaaagcagg cctccacaag acagaacagc catctgtgtg
     2281 gcgggtctca gctacacggg ggggctggtt gtgtgtgttt gtttctttcc aatagtcctt
     2341 gttctcctcc accacatacc ttgtcaaaaa tatagttata agtatttctc cttgctgtgg
     2401 gcattacatt tttgtaaatg ctaatggtta aaaagcatca gaatagaggt tattttcccc
     2461 ataaaaaggc tcttggccaa cactcagtta tttagagtaa aagagagaga aaaaagaaag
     2521 gtgctgttag atgtaggaga gttcaagcct gagaaattcg caaaatggcc attacactga
     2581 ggagcagtgt cagtcgtgag ctagctatgg tggctcactc ctagaatctt agcactcggg
     2641 aagctaagaa aggaatattg ccaaatgttc aaagcccgcc tgaactacat aggaacctcc
     2701 gggttagcct gggctactga ggacctctgt caggaaaaga aaagagcaca cttgtgtggt
     2761 gagaagcgct gctgtaagaa gcacagctgc agtacagcat tgccttgatc cccgctccac
     2821 agtgttcagc caatcacaga cggctattct tcagacaccc aactttagta gatgtttcct
     2881 ttcatcttgt acttttagag tccatataat aaaaaaataa tttctacagc ataggttatc
     2941 tttatcaccc gagtgctaca gtgacgagaa tggggtgggt gaggctacca ctgaggccct
     3001 gctagaggat ttgggtttgt atctatgctc tgccccacgc agctcctaca ggagtagcag
     3061 aggcacagcc acagacagta gagagaagaa ggctggggaa gcatgaacgg cgtttgctta
     3121 taccaacgtg ctggcctaat acattataca actgaagaaa atacttcatg agcagcttag
     3181 gcgtgaccca tctgactgag tagaggtctt tcaagagcca taagggagag cagtgttcac
     3241 cttgatcttt aaggggttgg ggatttagct cagtggtaga gcacttgcct agcaagcgca
     3301 aggccctggg ttcggtcccc agctccgaaa aaaaagaaaa aaaaaaaaga aaaatcaact
     3361 tgatctttaa gtctggcacc tcttttttag caacagtatt ttaaattcca cggagatttt
     3421 tatgacatgg taaataatta ggactttgca acagttttca atttaaacca gagattttct
     3481 aaaccctcag ttttattatg tcaagttaaa tgattatcta agagaatagt cttcacattt
     3541 ttaaattgcc cgcttaaaaa gccttaaact gcccatttta taagactgta tatacatatt
     3601 tgtctcaaat tacacttttt agtgggtcta catgaaattg tatacattca attcaccatt
     3661 agcagctaat attaatgcct taaaaataga ctttggtgct atacacttat actaaaatct
     3721 actataagtt taaaaaatgc gtaaaatgca ttttcttagg gtgcctgtca tttcaaagac
     3781 caaataaaca tttaatgtta aacatattag cagttgatca tttcaaaaag ggttttcata
     3841 tccttaagtt gcatgttttc accaatgaaa ttggctgtgt cctttccaag ggttaccctc
     3901 ctgaacagtt acaagtaaat agaactttaa caattgtttt acaactgata atcccttagt
     3961 gtgttttctt tataaaggtg atataataaa gttataaaag aaaaatgtct taataaaata
     4021 ttagttgtat gcca
//
