LOCUS       XM_039109316            2429 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tropomodulin 1 (Tmod1), transcript
            variant X4, mRNA.
ACCESSION   XM_039109316
VERSION     XM_039109316.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2429
                     /gene="Tmod1"
                     /gene_synonym="E-Tmod; Tmod"
                     /note="tropomodulin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 47 ESTs, 1 long
                     SRA read, 1 Protein, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments, including 88 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:25566"
                     /db_xref="RGD:3874"
     CDS             241..1014
                     /gene="Tmod1"
                     /gene_synonym="E-Tmod; Tmod"
                     /codon_start=1
                     /product="tropomodulin-1 isoform X2"
                     /protein_id="XP_038965244.1"
                     /db_xref="GeneID:25566"
                     /db_xref="RGD:3874"
                     /translation="MDPVLESVTLEPELEEALANASDAELCDIAAILGMHTLMSNQQY
                     YQALGSSSIVNKEGLNSVIKPTQYKPVPDEEPNSTDVEETLERIKNNDPELEEVNLNN
                     IRNIPIPTLKAYAEALKENSYVKKFSIVGTRSNDPVAFALAEMLKVNKVLKTLNVESN
                     FISGAGILCLVEALPHNTSLVELKIDNQSQPLGNKVEMEIVNMLEKNTTLLKFGYHFT
                     QQGPRLRASNAMMNNNDLVRKRRLADLTGPIIPKCRSGV"
ORIGIN      
        1 agccccgcgt tccgctcgtt gccgccgccc gcgctcgcgc cgccccgcat cccggtcacc
       61 agttcaggag acaaagacac agcctcccac aatgtcctac agacgagagc tggagaaata
      121 tcgagacctg gatgaggatg aaatcctggg ggccctcaca gaggaggagc tcaggacact
      181 ggaaaacgag ctggatgagc tagaccctga tgaaagatct gggttcccaa gcagaagcca
      241 atggatcccg tgctggagag cgtgacgctg gagccggaac tggaggaggc cctagcaaat
      301 gcctcagatg ccgaactatg tgacattgca gctattctgg gcatgcacac gctcatgagc
      361 aaccagcagt actaccaagc cttgggcagc agctccatcg tgaacaagga ggggctcaac
      421 agtgtgatca aacccacaca gtacaagcct gtgcctgatg aagaaccaaa ttcaacagat
      481 gtagaggaaa cgctggagcg aataaagaac aatgacccag aacttgaaga ggttaatctt
      541 aacaacatcc ggaatattcc catacccact ctcaaggcgt acgcggaagc cctgaaagag
      601 aactcctacg tgaagaagtt cagcatcgtg gggacccgca gcaatgaccc tgtggcattt
      661 gctcttgctg aaatgctgaa ggtgaacaag gtgttgaaga cgctgaatgt cgagtccaac
      721 ttcatctccg gagctgggat cctgtgcctg gtggaagctc tcccccacaa cacttctctg
      781 gtcgaactga aaatcgacaa ccagagccag cctttgggca acaaagtgga aatggagatc
      841 gtgaacatgt tggagaaaaa cacaacactc ctcaaatttg gctaccactt tacccagcag
      901 gggccccggc tgcgggcatc caacgccatg atgaacaaca acgaccttgt gaggaagagg
      961 aggctcgcag acctgacggg gcctattatt cccaagtgcc gcagcggtgt ctagtgcgca
     1021 aagggacgcc cacgcctatg aactggacgt gttctaccga taatgtgtgt tccccagtgg
     1081 agaccaggag gcaaatgttg gcgtgaactc ttgtggttca gttctttgtg cactaaggtt
     1141 tagggtaact agtgactgta gttggacctt ttataaaata tggttaatgt gaaggttttc
     1201 tttagtcaca gaagttcagt ctgataatta tttaaaaatg cagaagccct caagctggca
     1261 ggccttgctg cagacagcgt gacactggca gagacagccc aggggccctt ggcggccgtg
     1321 ctttggtgct taggtgcact tacaacatga atgcatcagc acacaacact tcccacctag
     1381 tttggaagca tggtgaaaca atttatttca gatttgagca tagcagctca gtaaaagaac
     1441 atagattcat gatttttcaa ccccacttga aacgttaaaa tcaagattaa agctgccaaa
     1501 ttgattccag gatcaagtcc ccacccccta agaatgaaag acaagcccca gaattttcta
     1561 agaatcagaa agacacagga ttccttctgc caggtaagag aaagggggag aaaaaggcaa
     1621 tagtggaatt gagtttcaaa acctaccacg ccaagcaaca gacatgagtg ctgtgtgaac
     1681 acctgggagg ttctcatctg tagtcagaaa tcatttcttc tttattgaat gccaacttca
     1741 tgatggatga aaacttacaa ccacataaaa acatcttcca ataccgcagt gagccaacgg
     1801 cttatgtgag atcaacacca ttgggtgaat ttccagtcca ccatgcctgt ggtatttagc
     1861 atggccctgc ttacagacac caagtgcctg cccggtcact taggagacaa atcaaatcac
     1921 acacgaagcc tctgaaggac agcagagtac aacatcccaa tggtaaggaa ttaggagatc
     1981 ctggacatac aacacaagga attattctga aacctaatct tggcattcct actggatccc
     2041 tttaacacca tgggagccag taaaaatgtt aaaatacact gttcttgtgc cttttaatag
     2101 accacagtgc cagttaaact agtacttttg ttgctttggg gagtgttttc cttagggatt
     2161 cagccgatat gacagtgatg gctcaaaagc tgcagagcac agccaggggc ttctgaccta
     2221 agacctgcac accggactgt aaggccatgg acagcacagg gtaactagag tggcatcggg
     2281 gcctcagcac tgtgagtggt cactgaggcc caggagtggc accaagctgc agggacagcc
     2341 agctccactc agcttctcct tgaaacacaa ctgcagctgc attctgcatc actggaaact
     2401 gcaaaataat attaaagcca tttggtgta
//
