LOCUS       XM_039109313            2411 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tropomodulin 1 (Tmod1), transcript
            variant X1, mRNA.
ACCESSION   XM_039109313
VERSION     XM_039109313.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2411
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2411
                     /gene="Tmod1"
                     /gene_synonym="E-Tmod; Tmod"
                     /note="tropomodulin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 48 ESTs, 1 long SRA read,
                     6 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:25566"
                     /db_xref="RGD:3874"
     CDS             16..996
                     /gene="Tmod1"
                     /gene_synonym="E-Tmod; Tmod"
                     /codon_start=1
                     /product="tropomodulin-1 isoform X1"
                     /protein_id="XP_038965241.1"
                     /db_xref="GeneID:25566"
                     /db_xref="RGD:3874"
                     /translation="MKKLRDKNALLPAGLRQKDQTTKAPTGPFKREELLDHLEKQAKE
                     FKDREDLVPYTGEKRGKIWVPKQKPMDPVLESVTLEPELEEALANASDAELCDIAAIL
                     GMHTLMSNQQYYQALGSSSIVNKEGLNSVIKPTQYKPVPDEEPNSTDVEETLERIKNN
                     DPELEEVNLNNIRNIPIPTLKAYAEALKENSYVKKFSIVGTRSNDPVAFALAEMLKVN
                     KVLKTLNVESNFISGAGILCLVEALPHNTSLVELKIDNQSQPLGNKVEMEIVNMLEKN
                     TTLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRLADLTGPIIPKCRSGV"
ORIGIN      
        1 accccagctt cactgatgaa gaagctgaga gacaagaatg cactgctccc tgcaggcctg
       61 aggcagaagg atcagaccac caaggcaccc acaggcccct ttaaaagaga ggagcttttg
      121 gaccacttgg aaaagcaagc gaaggaattt aaggaccgag aagacctggt tccctacaca
      181 ggggagaaac gaggaaagat ctgggttccc aagcagaagc caatggatcc cgtgctggag
      241 agcgtgacgc tggagccgga actggaggag gccctagcaa atgcctcaga tgccgaacta
      301 tgtgacattg cagctattct gggcatgcac acgctcatga gcaaccagca gtactaccaa
      361 gccttgggca gcagctccat cgtgaacaag gaggggctca acagtgtgat caaacccaca
      421 cagtacaagc ctgtgcctga tgaagaacca aattcaacag atgtagagga aacgctggag
      481 cgaataaaga acaatgaccc agaacttgaa gaggttaatc ttaacaacat ccggaatatt
      541 cccataccca ctctcaaggc gtacgcggaa gccctgaaag agaactccta cgtgaagaag
      601 ttcagcatcg tggggacccg cagcaatgac cctgtggcat ttgctcttgc tgaaatgctg
      661 aaggtgaaca aggtgttgaa gacgctgaat gtcgagtcca acttcatctc cggagctggg
      721 atcctgtgcc tggtggaagc tctcccccac aacacttctc tggtcgaact gaaaatcgac
      781 aaccagagcc agcctttggg caacaaagtg gaaatggaga tcgtgaacat gttggagaaa
      841 aacacaacac tcctcaaatt tggctaccac tttacccagc aggggccccg gctgcgggca
      901 tccaacgcca tgatgaacaa caacgacctt gtgaggaaga ggaggctcgc agacctgacg
      961 gggcctatta ttcccaagtg ccgcagcggt gtctagtgcg caaagggacg cccacgccta
     1021 tgaactggac gtgttctacc gataatgtgt gttccccagt ggagaccagg aggcaaatgt
     1081 tggcgtgaac tcttgtggtt cagttctttg tgcactaagg tttagggtaa ctagtgactg
     1141 tagttggacc ttttataaaa tatggttaat gtgaaggttt tctttagtca cagaagttca
     1201 gtctgataat tatttaaaaa tgcagaagcc ctcaagctgg caggccttgc tgcagacagc
     1261 gtgacactgg cagagacagc ccaggggccc ttggcggccg tgctttggtg cttaggtgca
     1321 cttacaacat gaatgcatca gcacacaaca cttcccacct agtttggaag catggtgaaa
     1381 caatttattt cagatttgag catagcagct cagtaaaaga acatagattc atgatttttc
     1441 aaccccactt gaaacgttaa aatcaagatt aaagctgcca aattgattcc aggatcaagt
     1501 ccccaccccc taagaatgaa agacaagccc cagaattttc taagaatcag aaagacacag
     1561 gattccttct gccaggtaag agaaaggggg agaaaaaggc aatagtggaa ttgagtttca
     1621 aaacctacca cgccaagcaa cagacatgag tgctgtgtga acacctggga ggttctcatc
     1681 tgtagtcaga aatcatttct tctttattga atgccaactt catgatggat gaaaacttac
     1741 aaccacataa aaacatcttc caataccgca gtgagccaac ggcttatgtg agatcaacac
     1801 cattgggtga atttccagtc caccatgcct gtggtattta gcatggccct gcttacagac
     1861 accaagtgcc tgcccggtca cttaggagac aaatcaaatc acacacgaag cctctgaagg
     1921 acagcagagt acaacatccc aatggtaagg aattaggaga tcctggacat acaacacaag
     1981 gaattattct gaaacctaat cttggcattc ctactggatc cctttaacac catgggagcc
     2041 agtaaaaatg ttaaaataca ctgttcttgt gccttttaat agaccacagt gccagttaaa
     2101 ctagtacttt tgttgctttg gggagtgttt tccttaggga ttcagccgat atgacagtga
     2161 tggctcaaaa gctgcagagc acagccaggg gcttctgacc taagacctgc acaccggact
     2221 gtaaggccat ggacagcaca gggtaactag agtggcatcg gggcctcagc actgtgagtg
     2281 gtcactgagg cccaggagtg gcaccaagct gcagggacag ccagctccac tcagcttctc
     2341 cttgaaacac aactgcagct gcattctgca tcactggaaa ctgcaaaata atattaaagc
     2401 catttggtgt a
//
