LOCUS       XM_039098400            1518 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus trimethyllysine hydroxylase, epsilon
            (Tmlhe), transcript variant X6, mRNA.
ACCESSION   XM_039098400
VERSION     XM_039098400.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1518
                     /gene="Tmlhe"
                     /gene_synonym="Tmlh"
                     /note="trimethyllysine hydroxylase, epsilon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 2 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     23 samples with support for all annotated introns"
                     /db_xref="GeneID:170898"
                     /db_xref="RGD:620629"
     CDS             346..1407
                     /gene="Tmlhe"
                     /gene_synonym="Tmlh"
                     /codon_start=1
                     /product="trimethyllysine dioxygenase, mitochondrial
                     isoform X3"
                     /protein_id="XP_038954328.1"
                     /db_xref="GeneID:170898"
                     /db_xref="RGD:620629"
                     /translation="MRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLD
                     ESTLFFTWPDGHVTRYDLDWLVKNSYEGQKQEVIQPRVLWNAKLYQDAQLPSVDFQGF
                     LETKEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLARRVSLIRETIYGRMWYFTSDFS
                     RGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAQQVLQRAP
                     EEFDLLSQVPLKHEYIENVGQCHNHMIGVGPILNIYPWNKELYLIRYNNYDRAVINTV
                     PYDVVRRWYAAHRTLTTELRRPENELWVKLKPGKVLFIDNWRVLHGRESFTGYRQLCG
                     CYLTRDDVLNTARILGLHA"
ORIGIN      
        1 gatgtggtac cataagttgt tgcaccaaca aagcaggctc cagaacttga tgaagagagg
       61 agacatagct cacggtcttc gtctgtccgg ctttaaaagt ttatttccat tttcgctcca
      121 ttggtgccat acggcttcca agtctgtgaa ttgtacttgg caccaacatg aagatcattt
      181 ggagctgggg accaaaccca gggccttgcg cttgctagtt tccctcctat atttcaggct
      241 ggcttttaac tcactgtata gctgaggctg acgttaaact ccacattctt ctatcaccat
      301 ctcccgagtg ctgggattat agaactgcaa tatgccagca ctgtgatgcg cttcgattat
      361 gtctggcttc gagaccactg ccgctcagcc tcgtgctata attctaagac tcaccagcgg
      421 agcctggaca ctgccagtgt ggatttatgc attaagccaa agacgattcg tctggatgaa
      481 agtacactct ttttcacttg gccagatggt catgtgacta gatacgacct ggattggctg
      541 gtgaaaaaca gctacgaagg gcagaagcag gaggtcatcc aacccagggt gctgtggaac
      601 gccaagctct accaggacgc ccagcttccg tctgttgatt tccagggttt cttggaaaca
      661 aaggaaggac tgaagaagtt tctgcagaac tttctgctct acggaattgc gtttgtagaa
      721 aatgtccctc ccactcagga gcacacggaa aagctggcac gaagggtcag cctaatcaga
      781 gaaaccattt atggaaggat gtggtatttc acgtcagact tttccagagg tgacactgcg
      841 tacaccaagc tagccctaga tcgccatacc gataccacct actttcaaga gccctgtggc
      901 attcaagtat ttcattgtct taagcacgaa ggaacaggtg gcaggacact gttggtggat
      961 ggattctatg cagcgcaaca agtactccaa agagcacctg aggaatttga cctcctcagc
     1021 caagtaccat tgaagcatga atatattgaa aatgttggac aatgtcacaa tcacatgata
     1081 ggggttggac ccatcttaaa tatctaccca tggaataagg agctgtattt gatcaggtac
     1141 aacaactacg acagggctgt catcaacact gtgccttacg acgttgtccg tcgttggtat
     1201 gcagcacacc gaaccctaac gactgaactg agaaggcctg agaatgaact ttgggtcaaa
     1261 ctgaagcctg gaaaggtact atttatagac aactggcgag tccttcacgg cagggagtca
     1321 ttcactggct accgtcaact gtgtggctgc tatttgacta gagatgatgt actgaatact
     1381 gctcgaattc taggtcttca tgcctaaaat ttaaagcact aggattatga atacactcgg
     1441 taccctacta cgagaatttt atatcaacag aacaatattg tattaaaaat tgtttcagat
     1501 tgtctatttt ccattcta
//
