LOCUS       XM_039098399            1773 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus trimethyllysine hydroxylase, epsilon
            (Tmlhe), transcript variant X4, mRNA.
ACCESSION   XM_039098399
VERSION     XM_039098399.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1773
                     /gene="Tmlhe"
                     /gene_synonym="Tmlh"
                     /note="trimethyllysine hydroxylase, epsilon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 2 long SRA reads, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     17 samples with support for all annotated introns"
                     /db_xref="GeneID:170898"
                     /db_xref="RGD:620629"
     CDS             325..1662
                     /gene="Tmlhe"
                     /gene_synonym="Tmlh"
                     /codon_start=1
                     /product="trimethyllysine dioxygenase, mitochondrial
                     isoform X1"
                     /protein_id="XP_038954327.1"
                     /db_xref="GeneID:170898"
                     /db_xref="RGD:620629"
                     /translation="MSGFETTAAQPRAIILRLTSGAWTLPVWIYALSQRRFVWMKVHS
                     FSLPNPFLPTSLPPAPMSSSRPRRLEEGVFGGKTDTECLFGKSTWKPHPKTKQTRSPS
                     GLSVAWTAAKQSLLDPKAIAHRSHGGCHCLPTIEPPKSPGTGPDGHVTRYDLDWLVKN
                     SYEGQKQEVIQPRVLWNAKLYQDAQLPSVDFQGFLETKEGLKKFLQNFLLYGIAFVEN
                     VPPTQEHTEKLARRVSLIRETIYGRMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPC
                     GIQVFHCLKHEGTGGRTLLVDGFYAAQQVLQRAPEEFDLLSQVPLKHEYIENVGQCHN
                     HMIGVGPILNIYPWNKELYLIRYNNYDRAVINTVPYDVVRRWYAAHRTLTTELRRPEN
                     ELWVKLKPGKVLFIDNWRVLHGRESFTGYRQLCGCYLTRDDVLNTARILGLHA"
ORIGIN      
        1 aggctgcacc gcaccgagtc tctgcttgcg ttttcctccg cagacctccg agccgtgact
       61 tccagcgcag gatgtggtac cataagttgt tgcaccaaca aagcaggctc cagaacttga
      121 tgaagagagg agacatagct cacggtcttc gtctgtccgg ctttaaaagt ttatttccat
      181 tttcgctcca ttggtgccat acggcttcca agtctgtgaa ttgtacttgg caccaacatg
      241 aagatcattt ggagctgggg accaaaccca gggccttgcg cttgctagaa ctgcaatatg
      301 ccagcactgt gatgcgcttc gattatgtct ggcttcgaga ccactgccgc tcagcctcgt
      361 gctataattc taagactcac cagcggagcc tggacactgc cagtgtggat ttatgcatta
      421 agccaaagac gattcgtctg gatgaaagta cactcttttt cacttccaaa ccccttcttg
      481 ccaacgagtc ttcctcctgc cccgatgtct tcatcgcgac cccgcaggtt agaagaggga
      541 gtgtttggcg ggaaaaccga cactgaatgt ctttttggaa aaagcacatg gaaacctcat
      601 cctaaaacaa agcaaacccg gtcaccctct ggactctcag tggcatggac tgcggccaaa
      661 cagtcccttc tggaccccaa ggccatcgca caccgatctc atggtggctg tcactgtttg
      721 cccacgatcg agccacccaa aagtcccggg acagggccag atggtcatgt gactagatac
      781 gacctggatt ggctggtgaa aaacagctac gaagggcaga agcaggaggt catccaaccc
      841 agggtgctgt ggaacgccaa gctctaccag gacgcccagc ttccgtctgt tgatttccag
      901 ggtttcttgg aaacaaagga aggactgaag aagtttctgc agaactttct gctctacgga
      961 attgcgtttg tagaaaatgt ccctcccact caggagcaca cggaaaagct ggcacgaagg
     1021 gtcagcctaa tcagagaaac catttatgga aggatgtggt atttcacgtc agacttttcc
     1081 agaggtgaca ctgcgtacac caagctagcc ctagatcgcc ataccgatac cacctacttt
     1141 caagagccct gtggcattca agtatttcat tgtcttaagc acgaaggaac aggtggcagg
     1201 acactgttgg tggatggatt ctatgcagcg caacaagtac tccaaagagc acctgaggaa
     1261 tttgacctcc tcagccaagt accattgaag catgaatata ttgaaaatgt tggacaatgt
     1321 cacaatcaca tgataggggt tggacccatc ttaaatatct acccatggaa taaggagctg
     1381 tatttgatca ggtacaacaa ctacgacagg gctgtcatca acactgtgcc ttacgacgtt
     1441 gtccgtcgtt ggtatgcagc acaccgaacc ctaacgactg aactgagaag gcctgagaat
     1501 gaactttggg tcaaactgaa gcctggaaag gtactattta tagacaactg gcgagtcctt
     1561 cacggcaggg agtcattcac tggctaccgt caactgtgtg gctgctattt gactagagat
     1621 gatgtactga atactgctcg aattctaggt cttcatgcct aaaatttaaa gcactaggat
     1681 tatgaataca ctcggtaccc tactacgaga attttatatc aacagaacaa tattgtatta
     1741 aaaattgttt cagattgtct attttccatt cta
//
