LOCUS       NM_001135029            1359 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus transmembrane and immunoglobulin domain
            containing 1 (Tmigd1), mRNA.
ACCESSION   NM_001135029 XM_001080775 XM_343944
VERSION     NM_001135029.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Arafa,E., Bondzie,P.A., Rezazadeh,K., Meyer,R.D., Hartsough,E.,
            Henderson,J.M., Schwartz,J.H., Chitalia,V. and Rahimi,N.
  TITLE     TMIGD1 is a novel adhesion molecule that protects epithelial cells
            from oxidative cell injury
  JOURNAL   Am J Pathol 185 (10), 2757-2767 (2015)
   PUBMED   26342724
REFERENCE   2  (bases 1 to 1359)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Sep 20, 2008 this sequence version replaced
            XM_001080775.1, XM_343944.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643287.24954.1,
                                           SRR26643288.41895.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               JAXUCZ010000010.1  62237215-62237316
            103-381             JAXUCZ010000010.1  62239708-62239986
            382-660             JAXUCZ010000010.1  62242242-62242520
            661-764             JAXUCZ010000010.1  62246481-62246584
            765-805             JAXUCZ010000010.1  62248087-62248127
            806-1359            JAXUCZ010000010.1  62248616-62249169
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1359
                     /gene="Tmigd1"
                     /gene_synonym="RGD1307444; Tmigd"
                     /note="transmembrane and immunoglobulin domain containing
                     1"
                     /db_xref="GeneID:363654"
                     /db_xref="RGD:1307444"
     exon            1..102
                     /gene="Tmigd1"
                     /gene_synonym="RGD1307444; Tmigd"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..809
                     /gene="Tmigd1"
                     /gene_synonym="RGD1307444; Tmigd"
                     /note="transmembrane and immunoglobulin domain-containing
                     protein 1"
                     /codon_start=1
                     /product="transmembrane and immunoglobulin
                     domain-containing protein 1 precursor"
                     /protein_id="NP_001128501.1"
                     /db_xref="GeneID:363654"
                     /db_xref="RGD:1307444"
                     /translation="MVRKIIRSLTASQLLLLVLSLPQGRTSSVLTVNGRTEDYILDTY
                     YGIQASLECAVQNHTRDEELLWYREAGRVDLKNGNKINTSSVCVSPINESDNGVSFTC
                     KLQRDQTVSITVVLNVTFPPLLSGNGFQTVEEGSDVRLVCNVKSNPQAQMLWYRNNSA
                     LVLEKGRHQIQQTRESFQLSITRVKKSDNGTYNCIASSSLKTETMDFHLVVKDKVPVM
                     PIEPIIAACVVVFLTLAFALLSRRERIMKLCVKESGRNSETAL"
     exon            103..381
                     /gene="Tmigd1"
                     /gene_synonym="RGD1307444; Tmigd"
                     /inference="alignment:Splign:2.1.0"
     exon            382..660
                     /gene="Tmigd1"
                     /gene_synonym="RGD1307444; Tmigd"
                     /inference="alignment:Splign:2.1.0"
     exon            661..764
                     /gene="Tmigd1"
                     /gene_synonym="RGD1307444; Tmigd"
                     /inference="alignment:Splign:2.1.0"
     exon            765..805
                     /gene="Tmigd1"
                     /gene_synonym="RGD1307444; Tmigd"
                     /inference="alignment:Splign:2.1.0"
     exon            806..1359
                     /gene="Tmigd1"
                     /gene_synonym="RGD1307444; Tmigd"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatccaacct gcattcatta aacatggtgc ggaagatcat ccggtccctg acagcaagcc
       61 aacttctctt actggtttta tctttgccac agggaaggac aagttctgtt ttgactgtga
      121 atggtagaac tgaggactat atcctggaca cttactatgg tatccaagca tctctggaat
      181 gtgctgttca aaaccacacc agagatgaag aacttctctg gtacagagaa gctggaagag
      241 tagatttgaa aaatggaaac aaaatcaaca ccagttctgt ctgtgtctct cccatcaacg
      301 aaagcgacaa tggagtcagc tttacctgca agctacagcg tgatcagacg gtgtccatta
      361 cagtggtgct caatgttact tttcctcctc ttttaagtgg aaatggcttc caaaccgtgg
      421 aggaaggcag cgatgtaagg ttggtttgca acgtgaagtc caaccctcaa gcgcaaatgc
      481 tgtggtacag aaacaacagc gccttggttt tagagaaagg ccgtcaccaa atccaacaga
      541 caagggagtc ttttcagttg tcaatcacca gagtcaagaa gtctgacaac gggacctaca
      601 actgtattgc tagctcatct ctgaaaacgg agaccatgga cttccacctg gttgttaaag
      661 acaaagttcc tgtcatgccg atagagccca tcattgctgc ttgtgttgtg gtcttcctga
      721 cgctggcttt tgcactgctt tctaggaggg aaagaataat gaagctctgc gtgaaagaga
      781 gtggccggaa ttcagaaaca gctctataaa taaaaaataa aataaaagcc gagctgccac
      841 ctaacgtgaa gagtttcgca tcaggacctt ctcgatttgt acaacgccat ctgtatatat
      901 cgctatttta aaattcactc ctgttaaatt gtcagaggtt acaaaggagt atttagttaa
      961 ttactaggca gttgttatga ctaatttgat cgacttattg aactatgata tgggcacggg
     1021 ttcaaaatag aaagatttca ggaagccctc tcctgaagta tgttgattaa tttcaattca
     1081 ttcctaatag aacggtaacc acccactatt cgactcatag ttttctacac aggagattaa
     1141 ctgatatttg gatgttctaa atcagtgcag tagctaagaa tggaagcagt gaccaacata
     1201 gaacgatgac attcctaagt tgccagggag cacgtagaga tataaactgt cccctgcatt
     1261 cgatgtcatc ccatcaatgt tttgggacta aaggagggaa gacctaatct cagagtgtaa
     1321 gacagtcctc caggtggaat aaattttgta tcatgagga
//
