LOCUS       XM_006243996            2004 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane inner ear (Tmie),
            transcript variant X3, mRNA.
ACCESSION   XM_006243996
VERSION     XM_006243996.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006243996.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006243996.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2004
                     /gene="Tmie"
                     /gene_synonym="RGD1562523"
                     /note="transmembrane inner ear; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 13 ESTs, 8 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     73 samples with support for all annotated introns"
                     /db_xref="GeneID:501061"
                     /db_xref="RGD:1562523"
     CDS             396..857
                     /gene="Tmie"
                     /gene_synonym="RGD1562523"
                     /codon_start=1
                     /product="transmembrane inner ear expressed protein
                     isoform X2"
                     /protein_id="XP_006244058.1"
                     /db_xref="GeneID:501061"
                     /db_xref="RGD:1562523"
                     /translation="MAGRQRGSGRLWALGGAALGACLAGVASQLVEPSTAPPKPKPPP
                     LTKETVVFWDMRLWHVVGIFSLFVLSIIITLCCVFNCRVPRTRKEIEARYLQRKAAKM
                     YTDKLETVPPLNELTEIPGEDKKKKKKDSVDTVAIKVEEDEKNEAKKKGEK"
ORIGIN      
        1 gagaaactga ggcccaaggg agaagggtca ggggctgggg gaatatgttg gtcaagagcc
       61 tacccctaaa cctttccctt tctccctccc tgctccccac cacgtcagtg cccttgggat
      121 ggagtagaag gtctaaaagt ctgatagcct aggcggggtg ccacccacac ctaccctcac
      181 cccagtagtg atggcgcagg tggcgtcccg ggaacctgac acccaagatg aataaatgat
      241 gcggactcaa ccgcccgcag ccagaactct ccgcggccgc tgccactacc accgtcaccg
      301 cctgccggtg gccaggggca gtcacctggt agctctgtgc atcagccccc tctgctctca
      361 ggacctgtag cggagcccgc ggcaaacagg agaacatggc cgggaggcag cgtggctcgg
      421 ggcggctctg ggcgctgggc ggcgccgcgc tgggggcttg cctggcgggt gtcgcctcgc
      481 agctggtaga gcccagcacg gccccgccca agcccaagcc gcccccactg accaaggaga
      541 ccgtggtgtt ctgggacatg cgcctgtggc atgtggtggg catcttttcc ctcttcgtgc
      601 tgtccatcat catcacgctg tgctgtgtgt tcaactgccg tgtaccgcgg acacggaagg
      661 agatcgaggc tcggtatcta cagcgaaaag cagccaagat gtacacagac aagctggaga
      721 ccgtgcctcc cctcaacgaa ctcacagaaa tccctggaga ggacaagaag aaaaagaaga
      781 aggacagtgt ggacaccgtg gctatcaagg tagaggagga cgagaagaat gaggcaaaga
      841 agaaaggaga gaagtgaggg cggcgtcctg gagatggcag ccggggctgg caggccctga
      901 agcgtaagtt caggccggga tccaggcatc aagactccga gttcatacat ggacggcaga
      961 ggctgtggtc caagggaaag ccaaggtcgt gggcattacc tcacggccca aaagatgtag
     1021 ggacaagact ggactctgtt catttcacat ggtcagtctg ggcacttctc acgggccact
     1081 gtccctctat agatatagag tggcctcaaa ctcctctccc catccaggca agcttctgtc
     1141 ccacccttct tgccaggggc agaagtggct atgaaggagt cagggattgg tcgatgagga
     1201 tggcaggatt gaacagattg ttcaacaaca cagatggagg actggaaggg gacttgtgac
     1261 atgggagatt ctctgacata gctagatagc caccccaaag agcaaggaga ttgccccaag
     1321 tttgacggtg atctgtcctt ggcttctagg gtgtccccat tatcaggaga atccctgatc
     1381 tggcaaatgc caagctctga aaacaaggta acagcgtgac agggcggaga ccactgaggg
     1441 gctggcagga ggcctagggc ctaagggctt ctggctcagg ggtggggtct gaaacataga
     1501 agaatgagtt gcgtgggccg agtgagaaaa cctgggtctc ctcacgggaa ccaagaacta
     1561 ctcaagacgc agtgcatggg gtacggacta ctgcggttgc cttttctctg gccaggactc
     1621 tgtcagacca ccagtctgcc gaacacagtg gtatgcaggt cctcttctgc catgtccctt
     1681 actttaaaaa gcatctctgc caagaagacg aatgaaacgc catggagggg ctggctccgg
     1741 agaggggaga tgtacgaagg cacttctagc gtcaaaatga ggagctgtgc ccggagctgg
     1801 ggactgagac cctggaagac tttcccagtg tgaagcctgc tagaaaggtg tcctgaggaa
     1861 atctataact aaagctgggt gccttctcag ccccaggcat ataaaacttc accctgagat
     1921 gaacttccac cccggtccca cgctttgcct ggtccttaag gattcctgta aaagtgacac
     1981 aacatgatag gtgcctcaga caaa
//
