LOCUS       XM_039106905            6553 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TATA element modulatory factor 1
            (Tmf1), transcript variant X2, mRNA.
ACCESSION   XM_039106905
VERSION     XM_039106905.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6553
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6553
                     /gene="Tmf1"
                     /note="TATA element modulatory factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100 ESTs, 3 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 69 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:114206"
                     /db_xref="RGD:620551"
     CDS             692..3310
                     /gene="Tmf1"
                     /codon_start=1
                     /product="TATA element modulatory factor isoform X1"
                     /protein_id="XP_038962833.1"
                     /db_xref="GeneID:114206"
                     /db_xref="RGD:620551"
                     /translation="MALEPKEQKHEDRQSNTPSPPVSSFSSGTSTTSDIEVLDHESVI
                     SESSASSRQETSDAKSSLHLMQTSFQLLSASACPEYGRLDDFQKLSESCCSSDAFERI
                     DSFSVQSLDSRSVSEINSDDELPGRGYALVPIVVSPSAPKTKVVESTEENVEEEEGNE
                     TLIAPSEEAELEESGRSATPVNCDQPDTLASPTPVNVGPSASGPAAEDGEAAENHPKA
                     PQLEQEDVGKTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSIS
                     SLKDEFTQRIAEAERKAQLACKERDTAKKEMKTMKEELASRLNSSQTADLLKEKDEQI
                     QGLMEEGEKLSKQQLHNSNMIKKLRAKDKDNESVIAKLKKKAKELEEELQHLRQVLDG
                     KEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMNELEEKSRSTQAALDSAYRELTDLH
                     KANAAKDSEVQEAALRREMKAKEELSGALEKAQEEARQQQETLALQVGDLRLALQRAE
                     QAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQATLGSQTS
                     SWEMLEKNLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVESQNALLRQENSRL
                     QAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEEARKEKTLLSSQLEMERMKVE
                     QERKKTIFTQETLKEKEHKPFSVSSTPTMSRSSSLSGVDMAGLQTSFLSQDESHDHSF
                     GPMSTSASGSNLYEAVRMGAGSSIIENLQSQLKLREGEISHLQLEISNLEKTRSIMSE
                     ELVKLTNQNDELEEKVKEIPKLRVQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVK
                     NMYKTQIDELLRQRLS"
ORIGIN      
        1 ttgtccagct tcgccaagca ggccctgtcc caggcccaga agtccatcga cagggtcctg
       61 gacatccagg aggaagagcc gagcgcctgg gccgaggcca tcccgtacgg tgagccagat
      121 tacaaaacga cgtgggtctg aagaatgggg atagtttaag tggatgtgag gaataagtcc
      181 ctctgtgagt ggaggatggg atacttcaac ctggggattg aactcaagct ctgaacctca
      241 gagttcacca acagcctctc aagcaattac aaagccagtt cggaggactg tagtagatga
      301 atctgaaaat ttcttcagtg cctttctctc tccatcggat gtgcagacca ttcagaagag
      361 tccagtggtc tcaaagcctc ctgctaaatc acagcgacca gaagaagaag tgaaaagcag
      421 tttacaagaa ccatcgtctc ctggccagtc cagaacctct gagacagcgg agtctgaagc
      481 gacagactct gcctgtgttt cgggagagac tccagccgtg ggcactccct cacctgtccc
      541 tgaaggcaag cgtgaagaaa ctgctagtga agagtctgag gggaaggtgc ccaccgtgag
      601 agcgaaggcg tctgaaagcg tagttaaggt aaacacagca gaagatgtat ctcccacatc
      661 cactcagtct cttacgaccg aaacgaagga tatggctttg gagcctaaag aacaaaaaca
      721 cgaagacaga caaagcaaca caccttctcc tcctgttagc tccttctcgt caggcacttc
      781 caccaccagt gacattgaag ttttagatca tgaaagtgta ataagtgaga gctcagctag
      841 ttcaaggcaa gagacttcag atgcaaagtc aagtcttcac ctcatgcaga cctcatttca
      901 gcttctctct gcatctgctt gtcctgagta tggccgctta gatgacttcc aaaagctcag
      961 tgagagttgc tgctcttcgg atgcttttga gagaatagac tcgtttagcg tgcagtctct
     1021 ggatagccgg agtgtgagtg aaatcaactc ggacgacgaa ctgccgggta gaggctatgc
     1081 tttagtacct atagtcgtga gtccttcagc cccgaagaca aaagtagtag aatctactga
     1141 ggaaaacgtt gaagaagagg aaggaaacga gacattaatt gcaccttctg aggaagcaga
     1201 attagaggaa agtggccgaa gtgctactcc agttaactgt gaccagccag atacattggc
     1261 ttctcctaca ccagtaaatg ttgggccctc tgcctctgga ccggccgctg aggatggtga
     1321 agctgctgaa aaccacccaa aagcaccaca gctggagcaa gaagatgttg gcaagacagt
     1381 tgaatttctg aatgagaagc tagaaaagag ggagactcaa ttattgtcac ttagtaagga
     1441 aaaggcactt ctagaggaag cttatgataa cctgaaggat gaaatgttca gagtaaaaga
     1501 agaaagtagt agcatttctt ccctgaaaga tgagtttacc cagaggatcg cagaagcaga
     1561 aaggaaagct caactcgcct gcaaagagag agacactgcg aagaaggaaa tgaaaaccat
     1621 gaaggaagaa cttgcctcta gattaaatag tagtcagact gcagaccttc tgaaggaaaa
     1681 ggatgaacag attcaaggct taatggaaga aggagaaaaa ctttcgaagc agcagctgca
     1741 taattccaac atgattaaga aattaagagc taaggataaa gacaatgaaa gtgttattgc
     1801 aaagctgaag aaaaaagcta aggagctgga agaggagcta cagcatttaa gacaggtcct
     1861 tgatggcaaa gaagaggttg agaaacaaca tagagaaaac attaaaaaac taaattctgt
     1921 agtagaacgc caggaaaaag atcttggccg acttcaggta gacatgaatg aacttgaaga
     1981 aaagagccga agtactcagg ctgccctaga cagtgcctac agagaactta ctgatcttca
     2041 caaagccaac gctgctaagg acagtgaggt acaagaagct gctctgaggc gtgagatgaa
     2101 agctaaagaa gaactttctg gggcactgga gaaggcccag gaagaagccc gtcagcagca
     2161 agagacttta gcacttcagg ttggggacct taggctagcg ctgcaacggg cagagcaagc
     2221 agctgccagg aaagaggatt acttacgcca tgagatcagt gaacttcagc agagactcca
     2281 agaagcagag aatcgaaacc aggagctgag tcaaagtgtt tcatcaacaa caagaccttt
     2341 gcttcgacag atagaaaatt tacaagcaac tctaggatcc cagacatcgt catgggagat
     2401 gctagagaag aatctttctg atcggctcgg tgaatcacag accttgttgg ctgcagcagt
     2461 tgaaagagaa cgtgcagcta cggaagaact cctagccaac aaaatccaga tgtcttcagt
     2521 ggagtcgcag aatgcattac tacgacagga aaacagtaga ctgcaggccc agctagagtc
     2581 agagaaaaat aaattaagaa aactagagga tgaaaatagc cggtaccagg ttgaattaga
     2641 aaatctaaaa gatgaatatg taagaacact tgaagaggca aggaaagaaa agacactttt
     2701 gagcagtcag ttagaaatgg aaagaatgaa agttgaacaa gaaaggaaga aaaccatttt
     2761 cactcaagaa acactaaaag aaaaggagca caagccgttt tccgtttcta gtactcccac
     2821 catgtcacga tccagttctc taagtggagt agatatggca gggctgcaga catccttcct
     2881 atctcaggat gagtctcacg accattcatt tgggccaatg tctacgtcag ccagtggaag
     2941 caatctttat gaagctgtaa ggatgggagc cggatcaagc attatcgaaa atcttcagtc
     3001 tcagctaaag ctgagggaag gagaaattag tcatttacag ctagaaatta gtaacctaga
     3061 aaaaactcga tccataatgt ccgaagagct agttaaatta acaaatcaga atgatgaact
     3121 tgaggagaaa gtgaaagaga tacccaagct tcgagttcag ctgcgagatt tggatcaaag
     3181 atacaacact attctgcaga tgtatggaga aaaagcagaa gaagcagagg aacttcgcct
     3241 ggatcttgaa gatgtaaaaa atatgtataa aactcaaata gatgaacttc taagacaaag
     3301 actcagctaa cttgtgaagt ttgtgttcca tcacactaat gtaaacactt atatataaat
     3361 gcagacgtac aataaattct tctacagaat tagaaacttg gatttgctgt agattgtaaa
     3421 aaaaactttt taaaaattct tttatagtac atagtgatat ttgcagttaa attattttat
     3481 gtaatatttg aattttattt ttgaaattgt tctttaaaat tttatttttt aaagcttttt
     3541 ttttcttttt ggtgccttga acagcacaga gatttattac tttatccact tatcagtaca
     3601 gctaggaaag gagattggtg tttcgtatta ttgtggatac ataattaatt gtattatatc
     3661 taatttgtat gtgtttgtac atattgagag atttacagag taatgttaac atggaaattt
     3721 tgaaatcttt cacattgaaa tcttcaacat atttcttaaa aatgttttaa acatttgagt
     3781 aaaaagatta ttaagcctat gactactaaa ttataaacta aggttttcct ttaaaagcag
     3841 aagtcacact gacatgtcta aaatttaaag agtaatttaa acttaaaaaa tatctctgtt
     3901 ttgaaaattt attccatgta tcttccacaa tgaagtatga acaaatgtga atgcattttg
     3961 ttacttatcc aaagaaagct ataaacattg actaggctta attgggtagt aggaaatgtt
     4021 gcttataata aattgtgata gatagcatca gtagcggata actttgaaat attttactac
     4081 actgttaaat gaatctaaca taataaaatc attaacaaaa tttactttta aaattagtca
     4141 atttactctt taaaaattac ttgtctagtt ttgtacaata ttttcaaaca ttaaaaatga
     4201 atgttttaaa acaatctgca tagcgaaaca taaaagtaat aggagtccac ttaaattggg
     4261 gattttgtaa ttttgtgtag tttaacattt tttccttgaa cctttaacaa atgaaaaaat
     4321 agcaaagagt agtatagaat aacattcttt agaatatagg ttttccctct tccaaatgtt
     4381 actttgttta aaagttaatc aggttgtgtt ataaacctgt aaaatatttt gataggtttt
     4441 attacttaaa aattatttaa ttgcttttat cacagtccct ctttatctgt tttttggctt
     4501 tttgtggttc cagccaaggt aaaaaataat ccaaaaatac atggaaattc cagaaagagc
     4561 tgataaatgt cgaggtgtat gctgctcaga gcagcctgct ggcgtctcac ttctgactcc
     4621 gttgtccgtc catccccagc ccttatcagt cactgtgcca cctcagctat tggtctattg
     4681 taatacggtg gatgcactcc tgttcaggta ctggctccaa gtgaagaagc cagaggttag
     4741 ccagaatagc ttcctctact gggatgatga acgtcaacat tggcaatttt gctggaagtt
     4801 gggtagcttt taatgtttca gacatccacc tagggtcaaa actgtctaac cccctatgag
     4861 aagataggac ttcaagtaaa aacttaattt tagttacgtt ttaaactatg ctccagaaca
     4921 cagctgtgag tatccatctt gcagaatgga gaatttttag ggaatattca agtgaccttg
     4981 tgtttatctc gtgttcctgt gtttctgttg tgggagttca gatctgtagc gtgaataaat
     5041 gttcttttgg tgaaagtaac agtcataaaa ttaagtttcc gtattttagt ggtagaaaga
     5101 agcctcataa ctttttcata gctttaaatt gttttaatat tcaggggcaa gatgataaat
     5161 ctaatagcaa taaatatata gagttagaag agacaggaaa cctgaatttc aaaattcttg
     5221 gcaagcattt gaaactggta gtttgggaaa tataaaatac tttttaaaca aataatttgg
     5281 gaaatgtggt ggagaaaaga ttttgaaatt aaaatttcct gtattaaatt ctaaatgtta
     5341 taatattaac attaaatttt ttcttggtcc ttaataacat taataaaatc agcacactta
     5401 aaatcttaaa atgttttcaa cttatttatt cataaaatga catgcaacca tttatatttg
     5461 cttcacctct aaagtaatag ctgatgttca cactgctttt attttggcta gaatatactt
     5521 agacctttca atacacttca agttgataag gggcactgaa taaatttctt gtaaataacc
     5581 cagtaagtgg caaaagactt attaaacatt ggttctttaa ttaattttct ttgttatata
     5641 ttattgaaaa taatctacct atatgctagt aaatattcta atacataaaa tagtttgtaa
     5701 ttagatgctt ccattcttgg gggaagaaaa aagaaaaacc ccaggtactt ggagttaagt
     5761 gggccagatg tttggaggtg tcataccctt gtgcctccct gggaggccga gaggagactg
     5821 ctgctgctgg gcctctcttg agaacactct atagcattta gcatgtggaa tgtaccaaat
     5881 ccacgacatt acaattcaaa atagtctaag tgtggatgat ttctgactta gaagattttg
     5941 ggtttttgta gttaagtaaa tgtaaaaaat atttaggaag tatttttccc atcaattatt
     6001 tcactaattg aaagtttgat ttggcttatt aaaaagcaca tgattttggt ctagagagcg
     6061 cttgctgatc ttccggaagg cctgggctca attcccagca cccatgtggt ggcttacaac
     6121 catctctatc tccaatccca agggatccag caccctcttc ctgtgtcctc agacaccagg
     6181 cacacagtag tgcacaggca tagatgcaga ccaaacaccc atccacataa agttaaaaaa
     6241 aagttctaaa tgcacacaac ttgtagtatt taaaagaaag cccccaaatt ttaagaagtg
     6301 ggtttaacat gtcttatttt tactactgtt tagtattata gacatgaaag ctctagggat
     6361 cgtttctcat tctcattaca aaaaagctgg tccaagtttt cttatccttg gtaggtttaa
     6421 actaaaagaa aaagctacat attttgtaca gggctaaaag tatgaattta gctatagatt
     6481 gatattttaa ttccaaatga aggtaatgta aaataagcat ggatctgatt taaataaaga
     6541 tttcaaagtc tgc
//
