LOCUS       NM_001398743            2347 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus TMEM9 domain family, member B (Tmem9b),
            transcript variant 1, mRNA.
ACCESSION   NM_001398743 XM_017588987
VERSION     NM_001398743.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
REFERENCE   2  (bases 1 to 2347)
  AUTHORS   Matsuda,A., Suzuki,Y., Honda,G., Muramatsu,S., Matsuzaki,O.,
            Nagano,Y., Doi,T., Shimotohno,K., Harada,T., Nishida,E., Hayashi,H.
            and Sugano,S.
  TITLE     Large-scale identification and characterization of human genes that
            activate NF-kappaB and MAPK signaling pathways
  JOURNAL   Oncogene 22 (21), 3307-3318 (2003)
   PUBMED   12761501
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 22, 2021 this sequence version replaced XM_017588987.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.2993.1,
                                           SRR26643295.3527.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840106,
                                           SAMN12840107 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-193               JAXUCZ010000001.1  173217858-173218050 c
            194-285             JAXUCZ010000001.1  173215926-173216017 c
            286-394             JAXUCZ010000001.1  173211315-173211423 c
            395-529             JAXUCZ010000001.1  173209096-173209230 c
            530-2347            JAXUCZ010000001.1  173199225-173201042 c
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..2347
                     /gene="Tmem9b"
                     /gene_synonym="RGD1310775"
                     /note="TMEM9 domain family, member B"
                     /db_xref="GeneID:293415"
                     /db_xref="RGD:1310775"
     exon            1..193
                     /gene="Tmem9b"
                     /gene_synonym="RGD1310775"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..685
                     /gene="Tmem9b"
                     /gene_synonym="RGD1310775"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; transmembrane protein 9B"
                     /codon_start=1
                     /product="transmembrane protein 9B isoform 1 precursor"
                     /protein_id="NP_001385672.1"
                     /db_xref="GeneID:293415"
                     /db_xref="RGD:1310775"
                     /translation="MASLWCGSLLRLGSGLSMSCLALYVLLLAPLTGAAKNFEDVRCK
                     CICPPYKENPGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTI
                     KVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLLQSDDDIGDHQPFANAHDVL
                     ARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS"
     exon            194..285
                     /gene="Tmem9b"
                     /gene_synonym="RGD1310775"
                     /inference="alignment:Splign:2.1.0"
     exon            286..394
                     /gene="Tmem9b"
                     /gene_synonym="RGD1310775"
                     /inference="alignment:Splign:2.1.0"
     exon            395..529
                     /gene="Tmem9b"
                     /gene_synonym="RGD1310775"
                     /inference="alignment:Splign:2.1.0"
     exon            530..2347
                     /gene="Tmem9b"
                     /gene_synonym="RGD1310775"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcggagga tcccgagtcg gatcccgagc cggatcccga gccgggcgct gggctcgggg
       61 ctcgctgggg cggctggctc ccgcgatggc gagcctatgg tgcggaagcc tgctgcggct
      121 gggctcgggg ctcagcatgt cctgcctagc gctgtacgtg ctgcttctcg cgccgctgac
      181 aggcgctgcc aagaattttg aagacgtgag atgtaaatgt atctgccctc cctataaaga
      241 gaatcctggg catatttata ataagaatat atctcagaaa gattgtgatt gccttcatgt
      301 tgtggagcca atgcctgtgc gggggcctga cgtagaagcg tactgtctac ggtgtgaatg
      361 caaatatgaa gaaagaagtt ctgtcacaat caaggttacc attataattt atctctctat
      421 tttgggcctt ctgcttctgt acatggtata ccttacctta gttgagccca tcctgaagag
      481 acgcctcttt ggacactccc agctgttgca gagtgatgac gacattgggg accaccagcc
      541 ttttgcaaat gcacatgatg tgctggcccg ctctcgcagc cgagccaatg tcctaaacaa
      601 ggtggagtac gcacagcagc gctggaagct tcaggtccag gagcagcgaa agtctgtctt
      661 tgaccgacat gttgtcctca gctaactggg aactggaata aaggtgacta gaaaaaccat
      721 ggcagacaac tgagaagggt gggtgtgcac aactgggtgt ctgtgcattt taattccctg
      781 tttgttttta caaaaccttg ctggatggag gaagactcaa aactggaaac aaaccctgtg
      841 cttagtgttt ttcttgttaa tgtattaata gagacatttt taaagcacac agttccaagt
      901 caaccagtaa accttttcct acttgtgact tttactaata aaattaagct gcctgtgagt
      961 tatctttaaa gtcctgtgcc tggaacaagc tctctttctc accacgcagt cctaacttgg
     1021 tgttcaagat aatttccagg cgtggttgtg cttctctttc gtgtagtggg agaggaaggg
     1081 acgccttggg agtgccccag tagctctctc aagtcacttt tccagacaga tctgaatgca
     1141 tcagaccctc tacttcacac tcgctaatgt cccagtgtag ctggctcaca ctcgctaatg
     1201 tcccagtgta gctggctcac actccttaat gtcccagtgt agctggctca cactccttaa
     1261 tgtcccagtg tagctggctc acactcctta atgtcccagt gtagctggct cacactcgct
     1321 aatgtcccag tgtagctggc tcacactctc taatgtccca gtgtagctgg ctcacactcc
     1381 ttaatgtccc agtgtagctg gctcacactc cttaatgtcc cagtgtagct ggctcacact
     1441 ccttaatgtc ccagtgtagc tggctcacac tcgctaatgt cccagtgtag ctggctcaca
     1501 ctcgctaatg tcccagtgta gctggctcac actctctaat gtcccagtgt agctggctca
     1561 cactcgctaa tgtcccagtg tagctggctc acactcgcta atgtcccagt gtagctggct
     1621 cacactcgct aatgtcccag tgtagctggc tcacactcgt taatgatgtc ccagtgtagc
     1681 tggctcacac tcgttaatga tgtcccagtg tagctggctc acactcgtta atgatgtccc
     1741 agtgtagctg gctcacactc cttaatgtcc cagtgtagct ggctcacact cgctaatgtc
     1801 ccagtgtagc tggctcacac tccttaatgt cccagtgtag ctggctcctc agcttgctgg
     1861 cctccccact tgacttctgc actgactaca ttacctaaga ttctggttgg cctgaggctc
     1921 catttcatga caagttggat ctgaaatgcc tggcggctcc tcatgccatg aagatttgtt
     1981 tcgtgcactg tgatgtctga tgcaacatgt cctagaacaa actggccatt tgctagttta
     2041 cactataact aaacacagtc tcagcgtgtg tggtcttcct catcttcttg tagctctaag
     2101 gacttgaaca tttagaataa agacattttc tcttaagccc aagccttcct ggatgagtga
     2161 catacacata ctggtcagcc tctcctgtct tgctgagagg caactctttg aactaatgtg
     2221 ggcagctttg aactaggact agggttcaga ttgcctctct ctgagaagtc taacagttat
     2281 tggataactg gcgttttcct tcctacatcc tctttggaat gtaacaataa aataattgac
     2341 aaagccc
//
