LOCUS       NM_001105953            1480 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 9 (Tmem9), transcript
            variant 2, mRNA.
ACCESSION   NM_001105953 XM_001063617 XM_213883
VERSION     NM_001105953.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1480)
  AUTHORS   Kveine,M., Tenstad,E., Dosen,G., Funderud,S. and Rian,E.
  TITLE     Characterization of the novel human transmembrane protein 9 (TMEM9)
            that localizes to lysosomes and late endosomes
  JOURNAL   Biochem Biophys Res Commun 297 (4), 912-917 (2002)
   PUBMED   12359240
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1 and BC169086.1.
            
            On Mar 28, 2013 this sequence version replaced NM_001105953.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169086.1, DY317396.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-33                JAXUCZ010000013.1  50010211-50010243
            34-1480             BC169086.1         1-1447
FEATURES             Location/Qualifiers
     source          1..1480
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..1480
                     /gene="Tmem9"
                     /note="transmembrane protein 9"
                     /db_xref="GeneID:289046"
                     /db_xref="RGD:1307922"
     exon            1..42
                     /gene="Tmem9"
                     /inference="alignment:Splign:2.1.0"
     exon            43..144
                     /gene="Tmem9"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..630
                     /gene="Tmem9"
                     /note="proton-transporting V-type ATPase complex assembly
                     regulator TMEM9"
                     /codon_start=1
                     /product="proton-transporting V-type ATPase complex
                     assembly regulator TMEM9 precursor"
                     /protein_id="NP_001099423.2"
                     /db_xref="GeneID:289046"
                     /db_xref="RGD:1307922"
                     /translation="MKLLCLVAVVGCLLVPPAQANKSSEDIRCKCICPPYRNISGHIY
                     NQNVSQKDCNCLHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGAL
                     LLYMAFLMLVDPLIRKPDAYTEQLHNEEENEDARSMAAAAASIGGPRANTVLERVEGA
                     QQRWKLQVQEQRKTVFDRHKMLS"
     exon            145..236
                     /gene="Tmem9"
                     /inference="alignment:Splign:2.1.0"
     exon            237..345
                     /gene="Tmem9"
                     /inference="alignment:Splign:2.1.0"
     exon            346..477
                     /gene="Tmem9"
                     /inference="alignment:Splign:2.1.0"
     exon            478..1452
                     /gene="Tmem9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggagcctg ctggtctttg gcggctgcgg cggagcttgc aggcgtctag tcttgctggc
       61 tcagcaagcc cgataagcat gaagctgctg tgtttggtgg ctgtggtggg gtgcttgctg
      121 gtacccccgg ctcaagccaa caagagctct gaagatatcc ggtgcaaatg catctgtccc
      181 ccttacagaa acatcagcgg gcacatttac aaccagaatg tgtctcagaa ggactgcaac
      241 tgcctgcatg tggtggagcc catgccggtg cctggccatg atgtggaagc ctactgcctg
      301 ctctgtgagt gtaggtatga ggagcgcagc accacaacca tcaaggtcat tatcgtcatc
      361 tacctgtctg tggtaggggc cctcttactc tacatggcct tcctgatgct ggtggaccct
      421 ctcatccgaa agccggatgc ctatactgag cagctgcaca atgaagaaga gaatgaggat
      481 gcccgctcca tggctgccgc cgccgcatcc attggaggac cccgagcaaa caccgtcctg
      541 gagcgggtgg aaggcgctca gcagcgatgg aagctacagg tgcaggagca gcggaagacg
      601 gtcttcgatc gacacaagat gctcagttag atgattgcca tggcagtgtc agggacccag
      661 acctcggcta ccagcttctg gggcagtctt ccctgggtct tcccttcaaa tgcccgtggc
      721 atttgtcctt ctccctctct ctagaaatgt actcgactgt tataactagg gagtgggatt
      781 gggtctttgg tctctagtgt ctctgtaggt ctctggggta gaagggaggg aaaggaaggc
      841 agaagagaac agagatggtt gagacggcca cacaattggt gaaattcctc cctcctgtcc
      901 tcgccgttcc tcacagctcc acatcttaag gatgtttata gctctttggg agacggagct
      961 gtgccgtcaa tagctcggtg ggtgcgacga aagtgtgacc cagccctcag cctgtgctct
     1021 acgatgccgt ggcccccatt cccacttttc cagtgccaat actttagctt ggcctggccc
     1081 cagcctcagg aactgttatg gtgccactga gcccatggtc atctccagag tccacctgga
     1141 agcctgcttc cctctcggct cctggtccac ccgtgcatgg cagtgcccat gcatgctggc
     1201 atacttagca gctgtcacct aacccccatc ccaggaggcc gtggggcctc ccacctctcc
     1261 ccagtgactg cagctactga gccctcaagt tggaccatag gacacaaggc tgtcagggga
     1321 cccgagtacc atgactcctg tccttggatg acctcttgtc cctgaatttc attgtaccat
     1381 gcatggagag aaatgtttgt ctttctgttg tctgtacatc aaagaagcca ttaaattgtt
     1441 ttatttctca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
