LOCUS       NM_001191854            2142 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus transmembrane protein 87B (Tmem87b), mRNA.
ACCESSION   NM_001191854 XM_342515
VERSION     NM_001191854.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Hirata,T., Fujita,M., Nakamura,S., Gotoh,K., Motooka,D.,
            Murakami,Y., Maeda,Y. and Kinoshita,T.
  TITLE     Post-Golgi anterograde transport requires GARP-dependent
            endosome-to-TGN retrograde transport
  JOURNAL   Mol Biol Cell 26 (17), 3071-3084 (2015)
   PUBMED   26157166
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jul 17, 2010 this sequence version replaced XM_342515.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760386
                              [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-176               JAXUCZ010000003.1  136515440-136515615
            177-237             JAXUCZ010000003.1  136519704-136519764
            238-332             JAXUCZ010000003.1  136520852-136520946
            333-464             JAXUCZ010000003.1  136522489-136522620
            465-515             JAXUCZ010000003.1  136524284-136524334
            516-606             JAXUCZ010000003.1  136526269-136526359
            607-668             JAXUCZ010000003.1  136526626-136526687
            669-852             JAXUCZ010000003.1  136526887-136527070
            853-952             JAXUCZ010000003.1  136529336-136529435
            953-1046            JAXUCZ010000003.1  136532556-136532649
            1047-1118           JAXUCZ010000003.1  136534347-136534418
            1119-1227           JAXUCZ010000003.1  136536407-136536515
            1228-1286           JAXUCZ010000003.1  136536601-136536659
            1287-1390           JAXUCZ010000003.1  136537919-136538022
            1391-1464           JAXUCZ010000003.1  136540665-136540738
            1465-1535           JAXUCZ010000003.1  136542619-136542689
            1536-1588           JAXUCZ010000003.1  136544929-136544981
            1589-1619           JAXUCZ010000003.1  136546657-136546687
            1620-2142           JAXUCZ010000003.1  136547650-136548172
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2142
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /note="transmembrane protein 87B"
                     /db_xref="GeneID:362212"
                     /db_xref="RGD:1307907"
     exon            1..176
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..1679
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /codon_start=1
                     /product="transmembrane protein 87B precursor"
                     /protein_id="NP_001178783.1"
                     /db_xref="GeneID:362212"
                     /db_xref="RGD:1307907"
                     /translation="MAAACRSMASLLPGLLCRLPAGAQMLRVALCLLCWVPAAVDAVP
                     ELGLWTRTVNDKSGPLIFRKTMFNSTDIRFSVKSFSCSGPVKFTIEWHLKYHTCHNEY
                     PELEEELFQKHELHADGDVCAYFKNIDCWTTKSENLDCSSDSQAFPSLNNKELTGIRN
                     ISSQEGSMDVVARTQKDGFHIFIVSIKTEKTDAIWDLNVSLSMVGPHGYISASDWPLM
                     IFYMVMCIVYILYGVLWLLWSACYWKDILRIQFWIAAVIFLGMLEKAVFYSEYQNINS
                     TGLSTQGLLIFAELISALKRTLARLLVIIVSLGYGIVKPRLGTVMHRVIGLGLLYLIF
                     AAIEGVMRVIGGSKHLAVALTDIVLAVIDSISVWFIFISLAQTMKTLRLRKNTVKFSL
                     YRHFTNTLIFAVLASIVFMVWTTKTFRIAKCQSDWMELWVDDAFWSFLFSLILIVIMF
                     LWRPSANNQRYAFMPLIDDSDDEVEEFMVTSENLTEGIKLRASKTVSNGTAKPTSENF
                     DEDLKWVEENIPSSFTDVALPVLVDSDEEIMTRSEIAEKMFSSEKIM"
     exon            177..237
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            238..332
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            333..464
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            465..515
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            516..606
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            607..668
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            669..852
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            853..952
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1046
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1118
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1227
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1286
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            1287..1390
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            1391..1464
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            1465..1535
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            1536..1588
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            1589..1619
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
     exon            1620..2142
                     /gene="Tmem87b"
                     /gene_synonym="RGD1307907"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tccgtgtcaa gatggctgcc gcctgtcggt ctatggcttc cctccttccc ggcctcctct
       61 gccgcctacc cgctggggcc cagatgctgc gcgttgccct gtgtctcctg tgctgggtcc
      121 cggcggctgt ggatgcagtc cctgagctcg ggctttggac gaggacggtc aatgacaaat
      181 caggaccttt gatattcagg aaaactatgt ttaactctac tgatatcaga ttttctgtga
      241 agtcgttcag ttgctctgga cctgtgaagt ttaccataga gtggcatttg aagtatcaca
      301 cctgtcacaa tgagtaccct gagctggagg aggagctgtt ccaaaaacat gaacttcatg
      361 ctgatggaga tgtctgtgct tacttcaaaa acattgactg ttggacaaca aaaagtgaaa
      421 acttagattg cagcagtgat tcacaggctt ttccttcatt aaataataaa gaactaacag
      481 gtatcaggaa catttcaagc caggaaggat caatggatgt tgtagccagg acccagaaag
      541 atggcttcca tatcttcatt gtttctatta aaacagagaa aacagatgca atctgggatt
      601 taaatgtttc tctttccatg gtggggcctc acggctacat ctctgcatct gactggcctc
      661 tcatgatttt ttacatggtg atgtgtattg tttacatatt atatggtgtc ctctggctgc
      721 tgtggtctgc ctgttactgg aaagatatac tgagaatcca gttctggatt gcagctgtta
      781 ttttcctagg aatgcttgaa aaggcagttt tttatagtga ataccaaaac atcaacagca
      841 ctggactgtc gacccaaggt ttactgatat ttgcggagtt gatatctgca cttaagagga
      901 cgttggctcg cctgcttgtg atcattgtga gcttgggtta tggcattgta aagccgcggt
      961 tgggaacagt gatgcaccgg gtgattggac tgggcctgct ttacttgatc tttgcagcca
     1021 ttgaaggtgt catgagagtc atcgggggtt ctaaacattt agctgttgct ttgactgaca
     1081 ttgttttagc agttattgac tccatttctg tgtggttcat ttttataagt ttggcacaga
     1141 ctatgaagac tctgaggcta agaaagaaca cagtgaaatt ttcgttgtat aggcatttta
     1201 caaatacact catctttgct gtgctggctt ctatagtgtt catggtgtgg acaacaaaga
     1261 ccttcaggat agcaaaatgc caatcagact ggatggagct gtgggttgat gatgcctttt
     1321 ggagcttcct cttttcactc atccttattg tgataatgtt cttatggagg ccatcagcaa
     1381 ataatcagag gtatgccttc atgcccttga tagatgactc tgatgatgaa gttgaggaat
     1441 tcatggtaac atctgaaaat ttaactgaag gaataaaact aagagcctca aaaacggttt
     1501 cgaacggaac agctaaaccc acttctgaga acttcgatga agatttgaag tgggtggaag
     1561 aaaatattcc ctcttccttc acagatgtag ctctcccagt gttagtggac tcagatgagg
     1621 aaattatgac cagatctgaa atagctgaaa aaatgttctc ttcagaaaag ataatgtgat
     1681 cagggcccca gtgggtccag tgtgcatggg agcgcggtca ggtgatggga aaggcctggc
     1741 tctcgtcaaa actgacagct gcgctatgat acatgtctca ctttgttgtc ttggagatct
     1801 gtgtatgcag gtgaagaact caggtgtggg agggtctgcc gccctcagaa agccatcttt
     1861 gaaacggact cataaagtca gttttgttgc cattaagttg cctgattttg gaaacaattt
     1921 aagaagtgtt aaagacatgt gttcagatgc ctcttaggcg gcagccacag gcatgccagg
     1981 ttgtgtccct cagttttctc cagacaaaag aatctgcagc tgggcgtggc ggcacactac
     2041 tggcagttga aagtctgtaa tttcaaggcc aagcctggtc tacatagttc caggacaacc
     2101 agagagatct acatagtgag accctgcctc aaaacacaga aa
//
