LOCUS       NM_001135016            1754 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus transmembrane protein 86A (Tmem86a), mRNA.
ACCESSION   NM_001135016 XM_001080842 XM_218592
VERSION     NM_001135016.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AA924203.1, BE100466.1, BE109619.1 and CO395066.1.
            
            On or before Sep 19, 2008 this sequence version replaced
            XM_218592.4, XM_001080842.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ112359.1, FQ179904.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132266, SAMD00132272
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-17                AA924203.1         420-436             c
            18-436              BE100466.1         1-419               c
            437-1100            BE109619.1         7-670
            1101-1754           CO395066.1         1-654               c
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..1754
                     /gene="Tmem86a"
                     /gene_synonym="RGD1305749"
                     /note="transmembrane protein 86A"
                     /db_xref="GeneID:308602"
                     /db_xref="RGD:1305749"
     exon            1..112
                     /gene="Tmem86a"
                     /gene_synonym="RGD1305749"
                     /inference="alignment:Splign:2.1.0"
     CDS             92..814
                     /gene="Tmem86a"
                     /gene_synonym="RGD1305749"
                     /EC_number="3.3.2.2"
                     /note="lysoplasmalogenase-like protein TMEM86A"
                     /codon_start=1
                     /product="lysoplasmalogenase TMEM86A"
                     /protein_id="NP_001128488.1"
                     /db_xref="GeneID:308602"
                     /db_xref="RGD:1305749"
                     /translation="MVSPVTVVKSEGPKLVPFFKATCVYFVLWLPSSSPSWFSALIKC
                     LPIFCLWLFLLAHGFRFLLAHPSASLIFAGLVFSAVGDAFLIWQDSGYFEHGLLMFAV
                     AHILYALAFGMRPLALRTGLVIGVLSGLCYALLYPRLSGAFTYLVGVYVTLISFMGWR
                     AMAGLRLGGAAWRWTELAAGVGALLFILSDLTIALNKFCFPVPYSRALIMSTYYAAQM
                     FIALSAVESREPVEDYRLSKAA"
     exon            113..377
                     /gene="Tmem86a"
                     /gene_synonym="RGD1305749"
                     /inference="alignment:Splign:2.1.0"
     exon            378..1731
                     /gene="Tmem86a"
                     /gene_synonym="RGD1305749"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagctttgtt cagtcgtctg ctcacctagc tctgggtgcg tcctggcggt gcaacccgga
       61 gcgggtgcca gcagcagcag ccgccgccgc catggtgtct ccggtcactg tggtgaagag
      121 cgaggggccc aagctggtgc ccttctttaa ggctacctgt gtgtatttcg tgctctggct
      181 gccctcctcc agcccatcct ggttcagcgc ccttatcaag tgcctgccca tcttctgcct
      241 ctggcttttt cttctggccc atggctttcg attcctgctg gcccacccca gtgcctccct
      301 catctttgcg ggactcgtct tctccgctgt gggcgatgcc ttcctcatct ggcaggactc
      361 cggatacttt gaacatggtc tcctgatgtt tgctgtggca cacatactct atgccttggc
      421 ctttggcatg cggccgctgg ctcttcggac aggcctggtg atcggagtgc tgtcaggcct
      481 gtgctatgcc ctcctctacc cgaggctgtc aggtgctttc acctacctag tgggggtcta
      541 cgtgaccctt atcagcttca tgggctggag ggctatggca gggctgcggc tgggtggggc
      601 agcctggcgg tggacagagc tggcagccgg tgtcggcgct ctgcttttca tcctctccga
      661 cctgaccatc gccctcaaca agttctgctt ccccgtgccc tactcccgag ccctcatcat
      721 gtccacttat tatgctgctc agatgttcat cgccctgtcg gccgtcgaga gccgggagcc
      781 ggtggaagac tacaggctga gcaaggccgc ctgaggggac tcgggtctgc tcagctttct
      841 cctgcggctg gggcccagat tttgggagtg tgcaggccct ggatcagcag gcagcttctg
      901 ggaaaggtgg caggcttgaa gggggaggga gggtaggctg aaggagctcc tgggaaagct
      961 ggtagtccag gatgacccag agagctcaaa gatgcagcct catatccctc acctgatcag
     1021 aggtagacat cccctcaccc catcaggact agcaaagccc tcctggaagg tgatggtgct
     1081 ttttgacccc tctgtttttt ctagatgcaa gagtgtggct atctcttatg tccaggacca
     1141 atggcaatgt caggcccctc cattcccacc ttttctcctc caatatgacc cacggacaag
     1201 caggcttgaa aagctctttc cccaggctcc ccaactggga agactggttg aaggtggagt
     1261 cttgtcttct gtgtccagcc ttgtggcttg aagtctttta agtggtgaat gggtgtccat
     1321 gagaagtagt agagggcact ttgttggact ggaagcttga gggtaccatg gtttcagatg
     1381 ggtcattttt ctctcaccct cgttccatca ccctcagcct ctgtccccag ggctagggtg
     1441 gaccatgcca aaggaagggg ccagtctcca gctatatgac tttgtcctgc tgtctgcaaa
     1501 agacttaaag tggcaggcct cagagagctc ctgaggggtg cttaacctgg ctgggagctg
     1561 gggccctccc ctagcccacc aacaatgctt tcttcctgct ctgggagtga gttctaaatg
     1621 acactttagg gtcttaagac ccgaggcaca gtcaatgcaa gcggagtaag gatggggtaa
     1681 ctccatcctc tactgcccat gtgaaaaaaa taaaattaaa ttaaaaccca aaaaaaaaaa
     1741 aaaaaaaaaa aaaa
//
