LOCUS       NM_001402263            1647 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 80 (Tmem80), transcript
            variant 1, mRNA.
ACCESSION   NM_001402263
VERSION     NM_001402263.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Li,C., Jensen,V.L., Park,K., Kennedy,J., Garcia-Gonzalo,F.R.,
            Romani,M., De Mori,R., Bruel,A.L., Gaillard,D., Doray,B., Lopez,E.,
            Riviere,J.B., Faivre,L., Thauvin-Robinet,C., Reiter,J.F.,
            Blacque,O.E., Valente,E.M. and Leroux,M.R.
  TITLE     MKS5 and CEP290 Dependent Assembly Pathway of the Ciliary
            Transition Zone
  JOURNAL   PLoS Biol 14 (3), e1002416 (2016)
   PUBMED   26982032
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1579889.1,
                                           SRR26360181.912479.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               JAXUCZ010000001.1  205865564-205865700
            138-157             JAXUCZ010000001.1  205869800-205869819
            158-251             JAXUCZ010000001.1  205870470-205870563
            252-344             JAXUCZ010000001.1  205870642-205870734
            345-1647            JAXUCZ010000001.1  205872631-205873933
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..1647
                     /gene="Tmem80"
                     /gene_synonym="RGD1308399"
                     /note="transmembrane protein 80"
                     /db_xref="GeneID:309109"
                     /db_xref="RGD:1308399"
     exon            1..137
                     /gene="Tmem80"
                     /gene_synonym="RGD1308399"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..550
                     /gene="Tmem80"
                     /gene_synonym="RGD1308399"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="transmembrane protein 80 isoform 1"
                     /protein_id="NP_001389192.1"
                     /db_xref="GeneID:309109"
                     /db_xref="RGD:1308399"
                     /translation="MAAVRPGRGSFKVLSSVPLQMLFHLSGLYYALYFLATLLMIVYK
                     SQVFSYPSNCLVLDLVLLLLMGIFEVAQLYLGTQGNLTEAEVPLAASLAFTAVSGLLS
                     VHFLLWQTLVLWMDSVLSTVLLVLHGLEAGLQVVVIADFIR"
     exon            138..157
                     /gene="Tmem80"
                     /gene_synonym="RGD1308399"
                     /inference="alignment:Splign:2.1.0"
     exon            158..251
                     /gene="Tmem80"
                     /gene_synonym="RGD1308399"
                     /inference="alignment:Splign:2.1.0"
     exon            252..344
                     /gene="Tmem80"
                     /gene_synonym="RGD1308399"
                     /inference="alignment:Splign:2.1.0"
     exon            345..1647
                     /gene="Tmem80"
                     /gene_synonym="RGD1308399"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggagaatcg ggcctcggcc gcggtcggac gctcgctgca gcgcgcggcg ggaggagtga
       61 agatggcggg agggtgcggc caagaggctg ctgggattgt ggcggaccca gcggcaaaat
      121 ggcggccgtg cggccaggga gaggctcctt caaggtgctc tcgtcagttc ctcttcagat
      181 gctgttccac ctcagtgggc tgtactatgc tctgtacttc ctagccacac tcctgatgat
      241 tgtgtacaaa agtcaggttt tcagctatcc ttctaactgt ctggtcctgg atctggttct
      301 cttgcttctg atgggaattt tcgaagtagc tcagctatac ctaggcacac aaggcaacct
      361 gacggaggct gaagtgccac tggcagccag cctggcattc acagcagtca gtggcctcct
      421 ttctgttcac ttcctactct ggcagacctt ggtcctgtgg atggactcag tcctcagcac
      481 ggttctcctg gtgctgcatg ggctggaggc cggcctgcaa gtggtggtca ttgctgattt
      541 catcaggtag acagaccggg acaacctgca cagcagtgct cctcagcctc cagccagttc
      601 ctttgcccag aaaggaggga atctttttta ttgcttatct tagatggttt atacatcttt
      661 tttagtgagg ggggtacaag acctagggaa ggacagactt agaagcttga agatggccat
      721 catggacaat agtctagtga atcccagaga tgtgtaccca tgtcctgtgc tggggtgctg
      781 actatagcag gaccaccagt gatccccagg ctagtgaaag gcaaagcctt tcaggaagtc
      841 atcggccagg atagccctgc agctccacct tgtctcggcc ctagaaacac agaatcctgg
      901 caggagaact tggctgtgct ggtctgccac catgtgtttt ctcacacaca gattactgag
      961 ttctgtgcgg gagcactggc cctgggtctt gttctgagag cctgttgtac ttagttgcca
     1021 gactttggtc cagagctggg atccccctgg agctgcagga tggcaggcct tgtgttccag
     1081 tgtccctcca atttgcctcc ccatcaggcc agccctgaat gaaacggctt ggtttccaaa
     1141 aggaaacaaa agcaaatgta ttccaggtct ggtggcacac aaacctttaa tcccagcacc
     1201 caagaggcaa agatgggtat atgtttgtaa gttcaaagcc agcctgtctg gcctacatgg
     1261 taatttgagg gtcacccagg gttacatggt gagactgtgt ctttaaaaaa aaaagtatgc
     1321 aggccagaga gctggctatt atggccatct cagccatgtt cagggctgga ggtagggctg
     1381 gggaagttcc aaggagcaga agacagaata aaagaacaac ttttagtcag gttgtctggg
     1441 agtcacagtt caccaaactg cagcctttgt agagtgccaa gtgagtttca tctcctctcc
     1501 tcctagcctg ttttttctca aaaagtattt aagcagtatt ttttttttta cagtttctgt
     1561 cattctgtta ggtgttttct gtttacaatg ctatgttcaa atatctagtt tctcttttaa
     1621 aaaaataaat aagtagttat gccgtca
//
