LOCUS       XM_039109811            2153 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane protein 67 (Tmem67),
            transcript variant X4, mRNA.
ACCESSION   XM_039109811
VERSION     XM_039109811.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109811.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2153
                     /gene="Tmem67"
                     /gene_synonym="Mks3; Wpk"
                     /note="transmembrane protein 67; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 12 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313067"
                     /db_xref="RGD:1586167"
     CDS             49..1731
                     /gene="Tmem67"
                     /gene_synonym="Mks3; Wpk"
                     /codon_start=1
                     /product="meckelin isoform X4"
                     /protein_id="XP_038965739.1"
                     /db_xref="GeneID:313067"
                     /db_xref="RGD:1586167"
                     /translation="MGMGTMVMRTRPLAAMAVRSCFSALTGTVYLLLVLCEVSWAQIF
                     SFPFQRPETCDLNQYFDISALSCAPCGANQRRDALGTSCICLPGYHMISNNGGPSIIC
                     KKCPENMKGVTKDGWDCISCPNGLTAEGKCHCPSGHILVERNVSGSLLSQATCELCDG
                     NENSFTKPNALGVRCVRCEPTFVNTSRSCSCSEPHISTGGLCFSNTGNFPQRLISTER
                     YGELGMSSNSEWFTKYLQATAAACWTHSNLTSCQALGNMCVMNMNSYDSTTFDACRLF
                     HYVFEGAAGLTGVHSVPFWRQNLPWLFYGDQPGLASQVLSTTPLPTNFSFKGQNQLKF
                     VAASYDIRGNFIRWQTVKGGVLQLCPDTERRLDAAYSFGTTYQQNCEISLSKLLADFP
                     SPVFYDIYLEYTDEVQHHYLWAIPVLNLNLQHNKLFVNQDSSSSKWLLTRRIFLVDAV
                     SGRENDLGNQPRVIRVATQISLSIRLVPNTKNGNIYTPLLTIAYSDIDIKNAYSQSVK
                     ISFSVKYEMNQGDAFVQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQ"
ORIGIN      
        1 tcagtggact caccgaggag gctgctgggg agccagtgac tgtgaaccat gggtatgggt
       61 accatggtga tgcgtacaag gcctttggcg gccatggcgg tcaggtcctg tttttcagct
      121 ctgactggca ctgtgtacct tctcttggtt ctttgcgaag tctcatgggc ccaaatcttc
      181 tccttccctt tccagcggcc ggagacttgc gatctcaacc agtacttcga catctcggcg
      241 ctctcctgtg ccccctgtgg agccaaccag cggagggacg cactgggaac ttcctgtata
      301 tgtctaccag gatatcatat gatttctaat aatggaggac cttccattat ttgtaaaaag
      361 tgtccagaaa acatgaaagg tgttaccaaa gatggctggg actgcatttc ttgccctaat
      421 ggtttaactg ctgaggggaa gtgccactgt cccagtggcc atatattagt ggaaagaaat
      481 gttagcgggt ctttgttatc ccaagcaact tgtgagcttt gtgatggaaa tgaaaactcg
      541 tttacaaaac ccaatgcttt aggagtcagg tgtgtccgct gcgaaccaac attcgtgaat
      601 acaagccggt cgtgttcatg ttcagagcct cacatttcga caggtggatt atgtttcagc
      661 aacacaggga attttcctca acgtttaatt tccactgaac gttatggcga gcttggcatg
      721 tcatcaaact cagaatggtt tacaaagtat ttgcaggcaa cagcagctgc atgctggact
      781 cacagcaacc tgacatcttg ccaagctctc gggaatatgt gcgtgatgaa catgaactct
      841 tacgactcga ctacattcga tgcttgccga ctgttccact acgtcttcga aggcgctgct
      901 gggctgaccg gcgtgcattc tgtcccgttc tggagacaga accttccttg gctgttttac
      961 ggagaccagc caggattggc ttctcaagtt ctcagtacta cccctcttcc tacaaatttc
     1021 agttttaaag gacaaaacca gctgaagttt gttgctgctt cctacgatat acgaggaaac
     1081 ttcatcagat ggcaaactgt aaaaggtggt gttctacagc tttgtccaga caccgagaga
     1141 agactagatg ctgcatattc ttttggaaca acgtaccagc aaaactgtga aatctctctc
     1201 tctaaactcc tggctgactt tcccagtcct gtgttttatg atatttacct ggaatatact
     1261 gatgaagtgc aacatcatta cctttgggct atcccagtgt taaacctcaa tcttcaacat
     1321 aataaactgt ttgtgaacca agacagtagc tccagcaagt ggcttctgac tcggcgcatt
     1381 ttcttagtgg atgcagtaag tggacgagaa aatgacctag gaaatcagcc aagagtaatt
     1441 cgagttgcta cccagatatc actgagcata cgccttgtac ccaacacaaa gaatggaaac
     1501 atctacactc ccttactcac cattgcctac agtgacattg acatcaaaaa tgcttatagc
     1561 cagtctgtga agatttcctt ctcagtgaaa tatgagatga atcaaggaga tgcatttgtc
     1621 cagacagata ttgctttggg tgtgttgggc gggctggctg tgctatcatc tctcttgaag
     1681 acggcagggt ggaagagacg cattgggagc cccatgattg acctacagta actcaacagc
     1741 agcatgggga aggctctgta tcagcttgtg tagccaggct gtcttctgga ctccaaggcc
     1801 agtagggtaa ggagtcggag caagagggtt tgtgctcctg ttgggatagt caaagctggc
     1861 cttccatgga catcaacttt aacctgttca tcccacagtg gtcaccgcgg gtcggttgta
     1921 gagtgtcagg tactgggtga tgagagtaac acagacaacg gagcctgccc tcagagttca
     1981 tgacagagaa agggaaggac tcttgataaa acgatgacag ttgctctcca caaagtactt
     2041 gagatggaac cgtgaagagg ttaacattga gcaagtggtt gaagctacat gcgagccaag
     2101 tagaaggcag gctttggtcc atgctgtgaa ggatcttgtg agtcaagaat tta
//
