LOCUS       XM_039109810            2378 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane protein 67 (Tmem67),
            transcript variant X3, mRNA.
ACCESSION   XM_039109810
VERSION     XM_039109810.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109810.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2378
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2378
                     /gene="Tmem67"
                     /gene_synonym="Mks3; Wpk"
                     /note="transmembrane protein 67; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 33 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313067"
                     /db_xref="RGD:1586167"
     CDS             50..1756
                     /gene="Tmem67"
                     /gene_synonym="Mks3; Wpk"
                     /codon_start=1
                     /product="meckelin isoform X3"
                     /protein_id="XP_038965738.1"
                     /db_xref="GeneID:313067"
                     /db_xref="RGD:1586167"
                     /translation="MGMGTMVMRTRPLAAMAVRSCFSALTGTVYLLLVLCEVSWAQIF
                     SFPFQRPETCDLNQYFDISALSCAPCGANQRRDALGTSCICLPGYHMISNNGGPSIIC
                     KKCPENMKGVTKDGWDCISCPNGLTAEGKCHCPSGHILVERNVSGSLLSQATCELCDG
                     NENSFTKPNALGVRCVRCEPTFVNTSRSCSCSEPHISTGGLCFSNTGNFPQRLISTER
                     YGELGMSSNSEWFTKYLQATAAACWTHSNLTSCQALGNMCVMNMNSYDSTTFDACRLF
                     HYVFEGAAGLTGVHSVPFWRQNLPWLFYGDQPGLASQVLSTTPLPTNFSFKGQNQLKF
                     VAASYDIRGNFIRWQTVKGGVLQLCPDTERRLDAAYSFGTTYQQNCEISLSKLLADFP
                     SPVFYDIYLEYTDEVQHHYLWAIPVLNLNLQHNKLFVNQDSSSSKWLLTRRIFLVDAV
                     SGRENDLGNQPRVIRVATQISLSIRLVPNTKNGNIYTPLLTIAYSDIDIKNAYSQSVK
                     ISFSVKYEMNQGDAFVQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQKRTGHQ
                     VP"
ORIGIN      
        1 ttcagtggac tcaccgagga ggctgctggg gagccagtga ctgtgaacca tgggtatggg
       61 taccatggtg atgcgtacaa ggcctttggc ggccatggcg gtcaggtcct gtttttcagc
      121 tctgactggc actgtgtacc ttctcttggt tctttgcgaa gtctcatggg cccaaatctt
      181 ctccttccct ttccagcggc cggagacttg cgatctcaac cagtacttcg acatctcggc
      241 gctctcctgt gccccctgtg gagccaacca gcggagggac gcactgggaa cttcctgtat
      301 atgtctacca ggatatcata tgatttctaa taatggagga ccttccatta tttgtaaaaa
      361 gtgtccagaa aacatgaaag gtgttaccaa agatggctgg gactgcattt cttgccctaa
      421 tggtttaact gctgagggga agtgccactg tcccagtggc catatattag tggaaagaaa
      481 tgttagcggg tctttgttat cccaagcaac ttgtgagctt tgtgatggaa atgaaaactc
      541 gtttacaaaa cccaatgctt taggagtcag gtgtgtccgc tgcgaaccaa cattcgtgaa
      601 tacaagccgg tcgtgttcat gttcagagcc tcacatttcg acaggtggat tatgtttcag
      661 caacacaggg aattttcctc aacgtttaat ttccactgaa cgttatggcg agcttggcat
      721 gtcatcaaac tcagaatggt ttacaaagta tttgcaggca acagcagctg catgctggac
      781 tcacagcaac ctgacatctt gccaagctct cgggaatatg tgcgtgatga acatgaactc
      841 ttacgactcg actacattcg atgcttgccg actgttccac tacgtcttcg aaggcgctgc
      901 tgggctgacc ggcgtgcatt ctgtcccgtt ctggagacag aaccttcctt ggctgtttta
      961 cggagaccag ccaggattgg cttctcaagt tctcagtact acccctcttc ctacaaattt
     1021 cagttttaaa ggacaaaacc agctgaagtt tgttgctgct tcctacgata tacgaggaaa
     1081 cttcatcaga tggcaaactg taaaaggtgg tgttctacag ctttgtccag acaccgagag
     1141 aagactagat gctgcatatt cttttggaac aacgtaccag caaaactgtg aaatctctct
     1201 ctctaaactc ctggctgact ttcccagtcc tgtgttttat gatatttacc tggaatatac
     1261 tgatgaagtg caacatcatt acctttgggc tatcccagtg ttaaacctca atcttcaaca
     1321 taataaactg tttgtgaacc aagacagtag ctccagcaag tggcttctga ctcggcgcat
     1381 tttcttagtg gatgcagtaa gtggacgaga aaatgaccta ggaaatcagc caagagtaat
     1441 tcgagttgct acccagatat cactgagcat acgccttgta cccaacacaa agaatggaaa
     1501 catctacact cccttactca ccattgccta cagtgacatt gacatcaaaa atgcttatag
     1561 ccagtctgtg aagatttcct tctcagtgaa atatgagatg aatcaaggag atgcatttgt
     1621 ccagacagat attgctttgg gtgtgttggg cgggctggct gtgctatcat ctctcttgaa
     1681 gacggcaggg tggaagagac gcattgggag ccccatgatt gacctacaga agaggacagg
     1741 acaccaggtc ccctgaacag aagttatagc gggtcgtgag agaggggtgc tgagagtcgg
     1801 acatgtgcaa gagcaggacg tgttctaact gctcagccat ctctccagct tttatttgta
     1861 tctttatttt tttcttccag tgcgggctga caggaacgaa tgtagacctc cagcctttca
     1921 tactttaaag gtttaggctt ccttttctgt gaactattta tgtctcttgc tcacttttct
     1981 gttagatttc ttctttttct tattcaaatg aaggagtttg tcctttgaaa gtattaatct
     2041 cctttttgat atccatgttg aaatctttta tgtaaattta tgagctacct gttatctata
     2101 cctttaacag tcaatatata gttagcatct agtatttaag ttccacactg tcatatgaat
     2161 gttatgtgta ttatatatat gatgtttatt tcatttaaaa aaacttgtcc atctcaacac
     2221 caaaagatat tcttctacct tttactgcat taaatttaca gtttacttct cgtcttagtc
     2281 agggtttcta ttcctgtaca aaacatcatg accaagaagc aagttggtga ggaaagggtt
     2341 tactcagttt acactttcca cattgctgtt catcacca
//
