LOCUS       NM_001034151            1093 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus transmembrane protein 54 (Tmem54), mRNA.
ACCESSION   NM_001034151 XM_342923
VERSION     NM_001034151.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1093)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC101399.1.
            
            On Oct 14, 2005 this sequence version replaced XM_342923.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC101399.1, DN931803.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676784, SAMN16676785
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1093
                     /gene="Tmem54"
                     /gene_synonym="RGD1304886"
                     /note="transmembrane protein 54"
                     /db_xref="GeneID:362605"
                     /db_xref="RGD:1304886"
     exon            1..142
                     /gene="Tmem54"
                     /gene_synonym="RGD1304886"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..777
                     /gene="Tmem54"
                     /gene_synonym="RGD1304886"
                     /note="beta-casein-like protein"
                     /codon_start=1
                     /product="transmembrane protein 54"
                     /protein_id="NP_001029323.1"
                     /db_xref="GeneID:362605"
                     /db_xref="RGD:1304886"
                     /translation="MCLRIGGLNVDEFRKLLMKTGLVLVVLGHVSFIAAAVLHGTMLR
                     FVATTRDAVVLQYCVVDILSVTSAIVVILAGISAVILSRYLPSTPLRWTVFSLSVACA
                     LLSLTCALGLLASIAVTFATKGRALLAPCTFENTELPTLAPDCPFDPTRIYSSSLCLW
                     AISLIFCLAESMSAVRCAQLVHRLLELRPWWGKSCHHTIQASPEPLDGHDLLSCTS"
     exon            143..336
                     /gene="Tmem54"
                     /gene_synonym="RGD1304886"
                     /inference="alignment:Splign:2.1.0"
     exon            337..396
                     /gene="Tmem54"
                     /gene_synonym="RGD1304886"
                     /inference="alignment:Splign:2.1.0"
     exon            397..585
                     /gene="Tmem54"
                     /gene_synonym="RGD1304886"
                     /inference="alignment:Splign:2.1.0"
     exon            586..720
                     /gene="Tmem54"
                     /gene_synonym="RGD1304886"
                     /inference="alignment:Splign:2.1.0"
     exon            721..1044
                     /gene="Tmem54"
                     /gene_synonym="RGD1304886"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggaggggtg cagggaaggg agcctccagg agcctgcttg ggcgggaaga ggcgcgcaga
       61 ccgcggagga gaaggatggg agagagaccc cgctgaggcc agcggggtac actggctggg
      121 atcaacatgt gtctgcgcat aggtggcctg aatgtggatg agttccggaa gttgctgatg
      181 aagacgggcc tggtgctggt agtgctgggt cacgtgagct tcattgcggc agccgtgctc
      241 catggcacca tgctgcgctt tgtagccacc accagggacg ccgtggttct acaatactgt
      301 gtggtagaca tcctctccgt cacctctgcc attgtggtca tccttgcggg aatttcggct
      361 gtcatcttgt cacgctatct ccccagcacc cccttgcgct ggaccgtgtt tagcctgagt
      421 gtggcctgtg ctctgctctc tctgacctgt gcccttggac tcctggcctc cattgctgtg
      481 accttcgcca ccaagggcag ggcactcctg gccccctgta cttttgagaa cactgaactc
      541 ccaacactgg caccggactg tccttttgac cctactcgaa tttacagctc tagcctgtgc
      601 ctctgggcca tctctctcat attctgtctg gcggagagca tgtctgccgt gcgctgcgcc
      661 cagctcgtgc atcggctgct ggaactgagg ccctggtggg ggaaaagctg ccaccatacg
      721 atacaagcaa gcccagagcc cctggatggc catgacctac tgagttgcac cagctgaccc
      781 ctgacacctc agcagctcca tggctactga ggcatgtgac cacatctgca ctgaccagtg
      841 cccagacagc gatggaagct tatggaagct caccagatcc aggattccta cagcaagccc
      901 cagaaagatc aaagggctcc tggggacgtg ggagagggct tggaacgccc tcccctggcc
      961 accaagacca atgcactgaa acaagacttt attttgaagt tattaaaaag aacaaagacg
     1021 ctccgtgtgg cgcatgcaga gggaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1081 aaaaaaaaaa aaa
//
