LOCUS       XM_017593389            1072 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane protein 53 (Tmem53),
            transcript variant X2, mRNA.
ACCESSION   XM_017593389
VERSION     XM_017593389.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017593389.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017593389.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1072
                     /gene="Tmem53"
                     /gene_synonym="RGD1307066"
                     /note="transmembrane protein 53; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 70 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313529"
                     /db_xref="RGD:1307066"
     CDS             412..1029
                     /gene="Tmem53"
                     /gene_synonym="RGD1307066"
                     /codon_start=1
                     /product="transmembrane protein 53 isoform X2"
                     /protein_id="XP_017448878.1"
                     /db_xref="GeneID:313529"
                     /db_xref="RGD:1307066"
                     /translation="MVFFSESLGIPSLRVVAQKLLELLFDYEIEREPLLFHVFSNAGV
                     MLYRYVLELLQTHQRFRHLHVVGTIFDSGPGDSDLIGALRALATILERRPAVLRLLLL
                     AAFALVVVLFHFLFAPFTALFHTHFYDRLQDSGSCWPELYLYSRADKVVSARDVERMV
                     EERLAHQVSVRGVDFVTSAHVSHLRDYPTYYTSLCVDFMHNCVQC"
ORIGIN      
        1 ggcggcgtcc gggcccgggc gaggtgaaac tgcgggagtt ccggcaggag gcccgtgctg
       61 acggcccgca acttcaccat ggcctcggcc gagctggatt acagcatcga gatcccggat
      121 cagccctgct ggagccagag gggaagggtg tctcacgtgc ctcaggctga cttcgaacct
      181 tgacttcact ctctaactga cgacaacctt gaacttctga tcctctcgtc gccacctccg
      241 gggaactagg acgatctaga gaacagccaa ggtgggaagg aggccgggaa gcaacagcct
      301 gtggtgattc tcttgggctg gggtggctgc agggacaaga acctggccaa gtatagtgcc
      361 atctaccaca aaaggggctg cattgtgatc cgatacacgg ccccctggca catggtcttc
      421 ttctctgagt ccttgggcat tccctcactt cgtgtggtgg cccagaagct gcttgagctc
      481 ctctttgact atgagattga gcgggagcct ctgcttttcc atgtcttcag caatgccggc
      541 gtcatgctct accgctacgt gctggagctc cttcagaccc atcagcgctt ccgccatttg
      601 catgtggtgg gcaccatctt tgacagtggc cctggggata gcgacctgat aggggccctg
      661 agggccctgg caaccatcct ggagcgcaga cctgccgtgc ttcgcctgtt gctcctggca
      721 gcatttgcgc tggtggtggt cctgttccac ttcctgtttg ctccattcac ggccctcttc
      781 cacacccact tctacgacag gctgcaggat tcaggctcct gctggcccga gctctacctc
      841 tactctagag ctgataaggt ggtctcagcc agggatgtgg aacggatggt ggaggaacgc
      901 ctggctcacc aggtctcagt gcgcggagtg gacttcgtga catctgcgca tgtcagccac
      961 ctccgagact atcctactta ctatacaagt ctgtgtgttg acttcatgca taattgtgtc
     1021 cagtgctgag gccctgctcc agaaataaat gccaacacct cccttcaacc ta
//
