LOCUS       NM_001399170             919 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 52 (Tmem52), mRNA.
ACCESSION   NM_001399170 XM_002729579
VERSION     NM_001399170.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 4, 2022 this sequence version replaced XM_002729579.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.24017.1,
                                           SRR26360176.1967507.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                JAXUCZ010000005.1  171330966-171331062
            98-141              JAXUCZ010000005.1  171331155-171331198
            142-183             JAXUCZ010000005.1  171331315-171331356
            184-362             JAXUCZ010000005.1  171331846-171332024
            363-919             JAXUCZ010000005.1  171332148-171332704
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..919
                     /gene="Tmem52"
                     /note="transmembrane protein 52"
                     /db_xref="GeneID:100362283"
                     /db_xref="RGD:2318502"
     exon            1..97
                     /gene="Tmem52"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..613
                     /gene="Tmem52"
                     /note="rCG31224-like"
                     /codon_start=1
                     /product="transmembrane protein 52"
                     /protein_id="NP_001386099.1"
                     /db_xref="GeneID:100362283"
                     /db_xref="RGD:2318502"
                     /translation="MAPGPSATQGILLLLPLLPLSQVTLGTADGNCDPSDQCPPQARW
                     SNLWHVGLTLLAIFLMLLCGVTASCVRLCCLRKQPHTQTHTPAAWQPCDGTVIPMDSD
                     SPAHSTVTSYSSVQYPLGMRLPLYFGEPDPDSMVPPTYSLYPTELPPSYDEVVKMIKA
                     REEAAAPSERTNPLPEASELETTGGPQESGPTP"
     exon            98..141
                     /gene="Tmem52"
                     /inference="alignment:Splign:2.1.0"
     exon            142..183
                     /gene="Tmem52"
                     /inference="alignment:Splign:2.1.0"
     exon            184..362
                     /gene="Tmem52"
                     /inference="alignment:Splign:2.1.0"
     exon            363..919
                     /gene="Tmem52"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttggactga gttccgctcc gtctgcggaa catggccccg gggccatcag ccacacaggg
       61 gatcctgctg ctgctgcctc tcctacctct gtctcaggtg acgctgggta ccgcggatgg
      121 caactgtgat ccctcggatc agtgcccgcc ccaggcccgc tggagcaacc tatggcatgt
      181 ggggcttacc ctgcttgcca tattcctgat gcttctgtgt ggggtcacag ccagttgtgt
      241 acgactctgc tgcctcagga aacagcctca cacccagaca cacacgccag cagcatggca
      301 gccctgtgac gggacagtca tccctatgga cagcgacagc cctgcacaca gcactgtgac
      361 ctcctacagc tccgtgcagt acccactggg catgcggttg cccctgtact ttggtgagcc
      421 agaccctgac tccatggtac cccccaccta cagcctatac cctacagagc tgccaccctc
      481 ctatgatgaa gttgtgaaga tgataaaagc cagggaggag gcagcagctc cctctgagag
      541 aaccaaccct ctgccagagg cctctgagct agagaccact ggagggcccc aggagtcagg
      601 ccccactccc tagcggccct agctacaccc gtttgcaaag agtgggtgtt ctttctcctg
      661 gagccattaa accccatcct ggattcccga gaccaaggaa acccacccgt gtcatccttc
      721 ccccgggaag gccagccatc cagcacattg ctgcagactc tcggcctcat tgctatgcaa
      781 tgcctggcca gccagcctgc cctcccaccc atcggggccc agcagaccct caccacggag
      841 gagcctggat cttgggaact caagccccac tggcctgtca gccctctgag gggaaaataa
      901 agtttatgta aacgtggtc
//
