LOCUS       NM_001127525            1055 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus transmembrane protein 50A (Tmem50a), mRNA.
ACCESSION   NM_001127525 XM_001067840 XM_216545
VERSION     NM_001127525.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Moldrich RX, Laine J, Visel A, Beart PM, Laffaire J, Rossier J and
            Potier MC.
  TITLE     Transmembrane protein 50b (C21orf4), a candidate for Down syndrome
            neurophenotypes, encodes an intracellular membrane protein
            expressed in the rodent brain
  JOURNAL   Neuroscience 154 (4), 1255-1266 (2008)
   PUBMED   18541381
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Kumada M, Iwamoto S, Kamesaki T, Okuda H and Kajii E.
  TITLE     Entire sequence of a mouse chromosomal segment containing the gene
            Rhced and a comparative analysis of the homologous human sequence
  JOURNAL   Gene 299 (1-2), 165-172 (2002)
   PUBMED   12459264
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161895.1.
            
            On or before May 23, 2008 this sequence version replaced
            XM_216545.4, XM_001067840.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161895.1, FQ225130.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760494, SAMN16093042
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1055
                     /gene="Tmem50a"
                     /gene_synonym="RGD1305638"
                     /note="transmembrane protein 50A"
                     /db_xref="GeneID:298552"
                     /db_xref="RGD:1305638"
     exon            1..111
                     /gene="Tmem50a"
                     /gene_synonym="RGD1305638"
                     /inference="alignment:Splign:2.1.0"
     exon            112..216
                     /gene="Tmem50a"
                     /gene_synonym="RGD1305638"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..597
                     /gene="Tmem50a"
                     /gene_synonym="RGD1305638"
                     /codon_start=1
                     /product="transmembrane protein 50A"
                     /protein_id="NP_001120997.1"
                     /db_xref="GeneID:298552"
                     /db_xref="RGD:1305638"
                     /translation="MSGFLEGSRCSECMDWGEKRNTVASIAAGVLFFTGWWIIIDAAV
                     MYPNMEQFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFM
                     LAFGSLIASMWILFGGYVAKEKAIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ"
     exon            217..329
                     /gene="Tmem50a"
                     /gene_synonym="RGD1305638"
                     /inference="alignment:Splign:2.1.0"
     exon            330..397
                     /gene="Tmem50a"
                     /gene_synonym="RGD1305638"
                     /inference="alignment:Splign:2.1.0"
     exon            398..490
                     /gene="Tmem50a"
                     /gene_synonym="RGD1305638"
                     /inference="alignment:Splign:2.1.0"
     exon            491..551
                     /gene="Tmem50a"
                     /gene_synonym="RGD1305638"
                     /inference="alignment:Splign:2.1.0"
     exon            552..1019
                     /gene="Tmem50a"
                     /gene_synonym="RGD1305638"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggaccggc acatccacat ccgggagtct ggttgcctgt ggctgttttg ttttcttgca
       61 gaactggagt gaacagaggc tgccaaacgc gccgcgacat cggacttgga ctgacctgaa
      121 aagatgtctg gatttctaga aggctccagg tgctccgagt gcatggactg gggggagaag
      181 cggaacacag ttgcctccat cgccgctggc gttctctttt tcacaggatg gtggatcatc
      241 atagacgcgg ctgtaatgta ccccaatatg gagcaattca accactcata ccatgcttgt
      301 ggcgtcatag caaccatagc cttcctcatg attaacgcag tatcgaatgg acaagtacga
      361 ggtgacagct acagcgaagg ctgtctgggc cagacaggag ctcgcatctg gctcttcatc
      421 ggcttcatgt tggctttcgg atccctgatt gcatccatgt ggattctctt tggaggttat
      481 gttgctaagg aaaaggccat agtgtatcct ggaattgctg tatttttcca gaatgccttc
      541 atcttttttg ggggcctggt ttttaagttt ggccgcacag aagacttgtg gcaatgagga
      601 cccccacttc tgcagcacaa ccgccccacc cccacttctg cagcatggcc gccctgcgtg
      661 ggatgttttt tctctgctcg cccaatcttt tgtaatactg ttttctaaac ttacctctga
      721 gtataatctc agcttaaaat cgtacaacgc tagaatcatt gagaactcct atgtaaactg
      781 caacggcctc gtgtggcgtg agccccatca gcttctacca caggcaagga aattgctggc
      841 gggagacact ccgccagctt ctgtcatggt ctgaagagtt ggttatggag aaatggtgga
      901 gcctttgggg tgaggattcg ctctggggtc caaagtgttt actaactcgg cgtctcccgt
      961 gtctggtgtt gaataatgtg taaacatttt cttgttatta aaaaactatt tggtggtgaa
     1021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//
