LOCUS       XM_039088936            2552 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane protein 44 (Tmem44),
            transcript variant X1, mRNA.
ACCESSION   XM_039088936
VERSION     XM_039088936.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088936.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2552
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2552
                     /gene="Tmem44"
                     /note="transmembrane protein 44; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 64 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:288028"
                     /db_xref="RGD:1563737"
     CDS             278..1705
                     /gene="Tmem44"
                     /codon_start=1
                     /product="transmembrane protein 44 isoform X1"
                     /protein_id="XP_038944864.1"
                     /db_xref="GeneID:288028"
                     /db_xref="RGD:1563737"
                     /translation="MLHAEPDNRPGWGASRSRNFPRGRRRLGRAMEEGASTAPPLWNW
                     DYLERCFARRRVCISFGLWICAACCWIAAHTLILYLRCTKKCGQDQSTLCAAFCLLTS
                     LCDTVGAILARQLTIQVFTGAYLAVVDFMNFISILFPVCGSKSKSKSGQSSRERRRRR
                     HLRASVFALALPLSLGPGWAVWTAIPKVSAPVRGPQRRLLGSLLQENPEVFGYLLGTV
                     AAFGSWASRIPPFSNICRGKSLSYIHLWTRFLSALAGLLYASAIVAHDRQPEYLLQAT
                     PWFLISLGRAALDLAIIILSCVMKSRMRRAFGFATVEARESADTQALLTCAEKEEENQ
                     EARTEDKNSDWVPLTSLSNCKPLKTMTAVSRYLELTVEPAQPAGCSATRLPGDGQTNT
                     GDASLEEPPSYPPIQVIQARVSSSSSSEVSSINSDLEQKYWEALNSEQWDPEDVNLER
                     RKDTEFLRSQVHRASLSPVDLTSDD"
ORIGIN      
        1 gcgatggcgt taggcgtgct cttgacagct tcagcggagg gaatggagga agcagaggcg
       61 atgtgtgccc cctccgtccc caaccccaca cttctgtgct gcaccttttc atccagggac
      121 agcgcgcctc ggggttccct ccatcccccc acgagcgctt ggccgcgcca gagtattgtc
      181 tggcttggga accggggcga actcgcaaag ggaccgggtg ctggcagggc cctcctttgt
      241 gctgcggccg agcgcggctc taccgctagg gggcggcatg ctccacgcag agcccgacaa
      301 taggccaggc tggggagcct cgcggtcccg gaactttccc cggggtcggc ggaggctcgg
      361 ccgggccatg gaggaggggg ctagcaccgc gcccccgctc tggaactggg actacctgga
      421 gcgctgcttc gcccgccgcc gcgtctgcat ctccttcggc ctgtggatct gcgccgcctg
      481 ctgctggatc gctgcccaca cgctgattct ctacttgaga tgcacaaaga agtgtggcca
      541 agaccagtcg acactgtgtg ctgcgttctg cctcctgacg agtctgtgtg acactgtggg
      601 ggcgattctg gccagacaac tcacgatcca ggtgttcact ggggcctacc tagcagttgt
      661 cgacttcatg aacttcatct ccattctctt tcctgtctgt ggatccaaat ccaagtcgaa
      721 gtccggtcag agcagcaggg agagaaggag aaggaggcac cttagagcca gtgtgtttgc
      781 cctggctctg cctctgagcc tgggtccagg ctgggctgtc tggactgcta tccccaaggt
      841 ttcagcccca gttcgagggc cacaacggag gctgctggga agccttctgc aggagaaccc
      901 ggaagtcttt ggctacctgc tgggtaccgt cgctgccttt ggctcctggg catcccggat
      961 ccctccattc tccaatatct gtcgggggaa gtcactctcc tatatccacc tgtggacccg
     1021 tttcctgtca gctctggctg gtctcctcta cgcctcagcc attgtggccc atgaccggca
     1081 gcctgaatac ctccttcagg ccacaccctg gttcctgatt tcactgggcc gagctgcact
     1141 ggaccttgct atcatcattc tgtcctgtgt gatgaagagc agaatgagac gggccttcgg
     1201 atttgctacc gtggaagcca gagagagtgc cgacacacaa gcccttttga cctgtgcaga
     1261 gaaggaagaa gaaaaccagg aggcccggac tgaggacaag aactcagatt gggtgcctct
     1321 gaccagcttg tcaaactgca agcccctgaa gacaatgaca gcagtcagtc gctacttgga
     1381 gctgaccgtt gagcctgcac agccggcagg ctgcagcgcc accaggctac ccggtgatgg
     1441 acagacaaac actggagacg cctccttgga ggagcctccc tcgtaccctc ccattcaggt
     1501 catccaggcc agagtgtctt ccagcagctc ctccgaggtc tcctccatta actccgacct
     1561 ggagcagaag tattgggaag ccctaaactc ggagcagtgg gaccctgaag acgtcaacct
     1621 ggaaaggaga aaggacacgg agttccttag atcccaggtg cacagggcct ctttgagccc
     1681 agtggacttg acctctgatg actaacatct tcaggagcca ggtcatcagg tcggaactca
     1741 aagtcaggca tctctcatgg actagatgga cgacgacacc acccacatca ggaacggaag
     1801 ctgctccaga agcttcccag ggagagaggc gccctgagct gtcacttagc ttggctaacc
     1861 tacaccatag ctcagaaccc tgtggacaga tctgcacatg cccagttcac aggcggatcc
     1921 tgtttgtaag gctttcttcc aaacgacgtg ggatctactc ccacgagatt tcgagcgtaa
     1981 atattgtttg cttaataaca ggatcgacct caccaagagc tactatttgg atctcagcag
     2041 aatgcatctt caagactcag ctgagctcag gtgaaagact gggtccacca gctcggagac
     2101 ctgggcatat gtatgggaat tggcttctgc cttccagtca acccatcatg ggcaggacaa
     2161 aggcaaccac tacctgctct ggagtagcgg gactccctcc agcctgggaa agtgtacgag
     2221 ggggctgggt gacggggtct tacgtgcttt agcaggtagc agaactcacg ctctgcataa
     2281 gggcacaatg aatgtgaagt gcacttccaa gcccggcctg gctactggag gatgattttt
     2341 tttttttttt tttttttttg tcttttttcg gggctgggga ccgaacccag ggccttgtgg
     2401 ttgctaggca agcgccctac cgctgagcca aatccccaac ccctggagga tgattttaat
     2461 aacatgacca tgagtgaggg gaagagtaaa gggagtggcc tggctggggt gagcactggg
     2521 gggtgaataa atttaaaatg tctcactttg ga
//
