LOCUS       NM_001191886            1306 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus transmembrane protein 42 (Tmem42), mRNA.
ACCESSION   NM_001191886 XM_343510
VERSION     NM_001191886.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Jul 17, 2010 this sequence version replaced XM_343510.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.35207.1,
                                           SRR26643288.36298.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-521               JAXUCZ010000008.1  131552252-131552772
            522-668             JAXUCZ010000008.1  131553341-131553487
            669-1306            JAXUCZ010000008.1  131554112-131554749
FEATURES             Location/Qualifiers
     source          1..1306
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..1306
                     /gene="Tmem42"
                     /gene_synonym="RGD1307118"
                     /note="transmembrane protein 42"
                     /db_xref="GeneID:363171"
                     /db_xref="RGD:1307118"
     exon            1..521
                     /gene="Tmem42"
                     /gene_synonym="RGD1307118"
                     /inference="alignment:Splign:2.1.0"
     CDS             330..803
                     /gene="Tmem42"
                     /gene_synonym="RGD1307118"
                     /codon_start=1
                     /product="transmembrane protein 42"
                     /protein_id="NP_001178815.1"
                     /db_xref="GeneID:363171"
                     /db_xref="RGD:1307118"
                     /translation="MAARPQSSGAAVSAAAYPDSPVELPARLQKGAMRRRFWGVFNCM
                     CAGAFGALAAAAAKLAFGSQVNIGLCVLGIIAMASTNSLMWTFFSRGLSFSMSSAIAS
                     VTVTFSNILCSAILGYVLYGECQEILWWGGVFLILCGLTLIHRKFPPDWKESKQQ"
     exon            522..668
                     /gene="Tmem42"
                     /gene_synonym="RGD1307118"
                     /inference="alignment:Splign:2.1.0"
     exon            669..1306
                     /gene="Tmem42"
                     /gene_synonym="RGD1307118"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaaattccc ctcctcccca agttcacgtc accagcagat tcctctcttg cagtaggtgc
       61 ctcccggttg cacgtcccct tcagtggcgc aaggtcctcg ctaacagatt cccatcccca
      121 aggttcgcct gagtcgcagg ctctccttag tctccggttt gcatcagctg caggggctcg
      181 gctccagatt ccctttattc gtaggctcgc ttcggtgccg gattccctgc ttcggcagat
      241 tcgcctcacc cgccaggctc cgccctcgcc gggctcacgt cgggtggcgg tgtgcgtagc
      301 agtcggctgt ggcgggcgca gagggcctca tggcggcccg gcctcagtcc tcgggggccg
      361 ccgtgtctgc ggccgcttac cctgactcac ccgtggagtt acccgctcgc ctacagaagg
      421 gcgcgatgcg gcgccgcttc tggggcgtgt tcaactgtat gtgcgccggt gcgttcgggg
      481 ccctggccgc cgccgccgcc aagctggcct tcgggagcca ggtgaatatt ggcttatgtg
      541 tcttaggcat tattgccatg gccagcacca attccctgat gtggaccttc tttagccgcg
      601 ggctcagttt ctctatgtct tcggccattg cgtctgtcac agtgactttt tcgaacatac
      661 tttgctcggc catcttaggc tacgtgctgt atggagagtg ccaggagatc ttgtggtggg
      721 gaggggtgtt cctcatcctc tgtgggctca ccctgatcca caggaagttc ccaccggact
      781 ggaaggagag caagcagcag tgatgacagt cggttgaata gatccactgt aaagataacc
      841 atgataccca gccatgggtc tgcaagtagg actgcttcca gggcagcctg ggagtgcagc
      901 cctgtcagcc acagggagat gccggaccag accctggcct ctgaccacct cacagcttga
      961 aggctaaagc attagttcct gtaagggaag atgactacca cagcatgagg cccaagtcct
     1021 tcagtattgg tatagggcct tgattcttgt gcaccggggc gtcctggaag actttgtgat
     1081 cttgggttgc acagcaactt ggcaggtacc tgaaaaaaaa aaaaaccacg tgattagaat
     1141 cctgccacct gaccagggtc cttcatgtag cccagcactg acagctggca gggcctcctg
     1201 acaaaacaac aaacatgtag tgtgtcatgc cttaggtcgt ctgtgatgcc tatgaatcca
     1261 acaaaaaaga aggcaacttg ggctaataaa cacttatttg taagtt
//
