LOCUS       NM_001412904            1258 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 40 (Tmem40), transcript
            variant 2, mRNA.
ACCESSION   NM_001412904
VERSION     NM_001412904.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.19328.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680413
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-36                JAXUCZ010000004.1  150491860-150491895 c
            37-117              JAXUCZ010000004.1  150477404-150477484 c
            118-252             JAXUCZ010000004.1  150476645-150476779 c
            253-327             JAXUCZ010000004.1  150473591-150473665 c
            328-381             JAXUCZ010000004.1  150470819-150470872 c
            382-417             JAXUCZ010000004.1  150469241-150469276 c
            418-450             JAXUCZ010000004.1  150468666-150468698 c
            451-498             JAXUCZ010000004.1  150468333-150468380 c
            499-570             JAXUCZ010000004.1  150466209-150466280 c
            571-645             JAXUCZ010000004.1  150466036-150466110 c
            646-708             JAXUCZ010000004.1  150465470-150465532 c
            709-1258            JAXUCZ010000004.1  150464123-150464672 c
FEATURES             Location/Qualifiers
     source          1..1258
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1258
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="transmembrane protein 40"
                     /db_xref="GeneID:680858"
                     /db_xref="RGD:1587025"
     exon            1..36
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            37..117
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..728
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="transmembrane protein 40 isoform 2"
                     /protein_id="NP_001399833.1"
                     /db_xref="GeneID:680858"
                     /db_xref="RGD:1587025"
                     /translation="MEASGSSSQSPNSSAVHRETEDLNHPETEFHKQHGKARERYERD
                     KSSSSSSSSSSSSSSSSSSSSSSSSDSSDEDKHSRGPRKHRRKSHRDSSPGADHGELE
                     VLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLL
                     CFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKF
                     RLPGFRRTN"
     exon            118..252
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            253..327
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            328..381
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            382..417
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            418..450
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            451..498
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            499..570
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            571..645
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            646..708
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            709..1258
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcgcattgc tgctcacatg agcccaggga ctccagggaa agagatggag gcttcaggat
       61 cttcttctca gtctccaaac agcagtgcgg tccacagaga aacagaagat ctaaaccacc
      121 cagagacaga gttccacaag caacatggga aggcccggga acgctatgag agagacaagt
      181 cttcctcctc atcctcctcc tcctcttcct cctcttcctc ctcttcctcc tcatcttctt
      241 cctcctcctc agacagcagc gatgaggaca agcactccag aggtccgagg aaacacagaa
      301 ggaagtcgca cagagacagc tctcctggtg ctgaccatgg ggaactggag gtgctgaagg
      361 acgagcttca gctctatgga ggcgctgctg gggaaatggt gcttgctggg gagtcaggac
      421 tccgaaggag aggttccggc tcagcggagg gagaagtgga ggcctctcag ttaaacagac
      481 tgaacataaa gaaggatgat gagtttttcc attttgtcct tctctgcttc gccattggag
      541 ccttgctggt gtgctaccac tactattcag actggttcat gtctcttggg gttggtctgc
      601 tcaccttcgc ttctctggag accatcggca tctacttcgg gctggtgtac cggatccaca
      661 gcgtacttca gggcttcatc cccctccttc agaagttcag gctgccaggg ttcaggagaa
      721 ccaactgaga tcactgcccg acagcagctg agccagtccc caatgtgacc actgtaacca
      781 ctgccaaacc tgagcccaga atacagagtg acatgctgga agacactagg aggccacaca
      841 acaaagagct ctttccttcc gtgtgatctg agtgtcagct gatctgagtg ggcaagctct
      901 tgttctgcag attagcacac agtctccatg gggaagagag aaggcacagc atctgggtca
      961 gcaagaaaga gctgggatgc cattgctctc aggggtagca tgagtcttgg gccttgcagg
     1021 ctggcatctt cgggcttggg tatctctggt gtcctcaggc catgctcatg aactcacagt
     1081 tccagcagag ccatcttggg acagctatcc tgaggcaggg agctaccagg ctgggtcccc
     1141 aggggaacct gcagataaga tactggggac caaagctgta gaccatcacc cagtgaccaa
     1201 ccctgttgcc cttggacttc taaaacccaa ataaatattc tattccctgt gctaaaaa
//
